Job Description P33570 Confidence 100.00% Date Thu Jan 5 11:52:13 GMT 2012 Rank 12 Aligned Residues 541 % Identity 23% Template c2o1xA_ PDB info PDB header:transferase Chain: A: PDB Molecule:1-deoxy-d-xylulose-5-phosphate synthase; PDBTitle: 1-deoxy-d-xylulose 5-phosphate synthase (dxs) from2 deinococcus radiodurans Resolution 2.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	D	L	A	N	A	I	R	A	L	S	M	D	A	V	Q	K	A	N	S	G	H	P	G	A	P	M	G	M	A	D	I	A	E	V	L	W	N	D	F	L	K	H	N	P	T	D	P	T	W	Y	D	R	D	R	F	I	L	S	N	G	H	A	S	M	L	L	Y	S	L	L	H	L	T	G	Y	D	L	P
Query Conservation
Alig confidence																				.																							.	.	.	.	.	.	.	.	.																.	.	.											.	.
Template Conservation																				.																							.	.	.	.	.	.	.	.	.																.	.	.											.	.
Template Sequence		L	P	A	L	T	E	E	L	R	G	E	I	V	R	V	C	S	R	.	G	G	L	H	L	A	S	S	L	G	A	V	D	I	I	T	A	L	H	Y	V	L	.	.	.	.	.	.	.	.	.	D	S	P	R	D	R	I	L	F	D	V	G	H	Q	A	.	.	.	Y	A	H	K	I	L	T	G	R	R	.	.
Template Known Secondary structure																		T	T	.	S	S	S								T											S	.	.	.	.	.	.	.	.	.		T	T	T	S					S	S	S	T	T		.	.	.						T	T	T	T	G	.	.
Template Predicted Secondary structure																				.																							.	.	.	.	.	.	.	.	.																.	.	.											.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.										70	.	.	.	.	.	.	.	.	.	80	.	.	.	.				.	.	.	.	.	90	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	E	L	K	N	F	R	Q	L	H	S	K	T	P	G	H	P	E	I	G	Y	T	P	G	V	E	T	T	T	G	P	L	G	Q	G	L	A	N	A	V	G	L	A	I	A	E	R	T	L	A	A	Q	F	N	Q	P	D	H	E	I	V	D	H	F	T	Y	V	F	M	G	D	G	C	L	M	E	G	I	S
Query Conservation
Alig confidence		.												.																																								.	.	.	.	.	.	.	.	.	.
Template Conservation		.												.																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		.	D	Q	M	A	D	I	K	K	E	G	G	.	I	S	G	F	T	K	V	S	E	S	E	H	D	A	I	T	V	G	H	A	S	T	S	L	T	N	A	L	G	M	A	L	A	R	D	A	Q	G	K	.	.	.	.	.	.	.	.	.	.	D	F	H	V	A	A	V	I	G	D	G	S	L	T	G	G	M	A
Template Known Secondary structure		.	G	G	G	G	G	T	T	S	T	T	S	.			S	S			G	G	G		T	T			S			S	S	S	S																	T		.	.	.	.	.	.	.	.	.	.										T	T	G	G	G	S
Template Predicted Secondary structure		.												.																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
			95	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.											.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	V	C	S	L	A	G	T	L	G	L	G	K	L	I	G	F	Y	D	H	N	G	I	S	I	D	G	E	T	E	G	W	F	T	D	D	T	A	K	R	F	E	A	Y	H	W	H	V	I	H	E	I	D	G	H	D	P	Q	A	V	K	E	A	I	L	E	A	Q	S	V	K	D	K	P	S	L	I	I	C
Query Conservation
Alig confidence															.																																																											.
Template Conservation															.																																																											.
Template Sequence		L	A	A	L	N	T	I	G	D	M	G	R	K	.	M	L	I	V	L	N	D	N	E	M	S	I	S	E	N	V	G	A	M	N	K	F	M	S	V	N	P	F	A	A	M	G	V	R	Y	V	G	P	V	D	G	H	N	V	Q	E	L	V	W	L	L	E	R	L	V	D	L	D	.	G	P	T	I	L	H	I
Template Known Secondary structure														S	.									S	B	S	S	S	B			S	S									T	T	G	G	G	T									S	S													T	T	S	S	.	S
Template Predicted Secondary structure															.																																																											.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240
		243	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		R	T	V	I	G	F	G	S	P	N	K	A	.	G	K	E	E	A	H	G	A	P	L	G	E	E	E	V	A	L	A	R	Q	K	L	G	W	H	H	P	P	F	E	I	P	K	E	I	Y	H	A	W	D	A	R	E	K	G	E	K	A	Q	Q	S	W	N	E	K	F	A	A	Y	K	K	A	H	P	Q	L	A
Query Conservation														.
Alig confidence														.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	T	T	K	G	K	G	L	S	Y	A	E	A	D	P	I	Y	W	H	G	P	A	K	F	D	P	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T	T	T								T	T	G	G	G	S			S	B		T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	F	T	R	R	M	S	G	G	L	P	K	D	W	E	K	T	T	Q	K	Y	I	N	E	L	Q	A	N	P	A	K	I	A	T	R	K	A	S	Q	N	T	L	N	A	Y	G	P	M	L	P	E	L	L	G	G	S	A	D	L	A	P	S	N	L	T	I	W	K	G	S	V	S	L	K	E	D	P	A	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	Y	V	P	S	S	A	Y	S	W	S	A	A	F	G	E	A	V	T	E	W	A	K	T	D	P	R	T	F	V	V	T	P	A	M	R	E	G	S	G	.	.	.	.	.	L	V	E	F	S	R	V	H	P	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			B							B																	T	T						S	S		T	T	T	T	T	.	.	.	.	.									G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.
Template SS confidence
																										314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.						.	.	.	.	.	360	.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		N	Y	I	H	Y	G	V	R	E	F	G	M	T	A	I	A	N	G	I	A	H	H	G	G	F	V	P	Y	T	A	T	F	L	M	F	V	E	Y	A	R	N	A	A	R	M	A	.	A	L	M	K	A	R	Q	I	M	V	Y	T	H	D	S	I	G	L	G	E	D	G	P	T	H	Q	A	V	E	Q	L	A	S
Query Conservation																																																.
Alig confidence																									.																							.																	.
Template Conservation																									.																																								.
Template Sequence		R	Y	L	D	V	G	I	A	E	E	V	A	V	T	T	A	A	G	M	A	L	Q	G	.	M	R	P	V	V	A	I	Y	S	T	F	L	Q	R	A	Y	D	Q	V	L	H	D	V	A	I	E	H	L	N	V	T	F	C	I	D	R	A	G	I	.	V	G	A	D	G	A	T	H	N	G	V	F	D	L	S	F
Template Known Secondary structure		G						S															T	T	.													G	G	G							T	T	T	T	T	T									S	B	B		.			T	T		T	T	T		B		S
Template Predicted Secondary structure																									.																																								.
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.		.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.		.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	L	T	P	N	F	S	T	W	R	P	C	D	Q	V	E	A	A	V	G	W	K	L	A	V	E	R	H	N	G	P	T	A	L	I	L	S	R	Q	N	L	A	Q	V	E	R	T	P	D	Q	V	K	E	I	A	R	G	G	Y	V	L	K	D	S	G	G	K	P	D	I	I	L	I	A	T	G	S	E	M
Query Conservation
Alig confidence																												.																				.	.																				.	.
Template Conservation																												.																				.	.																				.	.
Template Sequence		L	R	S	I	P	G	V	R	I	G	L	P	K	D	A	A	E	L	R	G	M	L	K	Y	A	Q	.	T	H	D	G	P	F	A	I	R	Y	P	R	G	N	T	A	Q	V	P	.	.	A	G	T	W	P	D	L	K	W	G	E	W	E	R	L	K	G	G	D	.	.	D	V	V	I	L	A	G	G	K	A	L
Template Known Secondary structure		T	T	T	S	T	T							S	S													.		S	S	S								S	S	B						.	.	T	T							T	T									S	.	.	S
Template Predicted Secondary structure																												.																				.	.																				.	.
Template SS confidence
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.		.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.			.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.			.	.	.	510	.	.	.	.	.	.	.
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.		.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.						.	.	630	.		.	.
Predicted Secondary structure																																			.																																			.	.	.	.	.					.
Query SS confidence																																			.																																			.	.	.	.	.					.
Query Sequence		E	I	T	L	Q	A	A	E	K	L	A	G	E	G	R	N	V	R	V	V	S	L	P	S	T	D	I	F	D	A	Q	D	E	.	E	Y	R	E	S	V	L	P	S	N	V	A	A	R	V	A	V	E	A	G	I	A	D	Y	W	Y	K	Y	V	G	L	K	G	A	.	.	.	.	.	I	V	G	M	.	T	G
Query Conservation																																			.																																			.	.	.	.	.					.
Alig confidence																.	.	.	.																.																																			.	.	.	.	.					.
Template Conservation																.	.	.	.
Template Sequence		D	Y	A	L	K	A	A	E	D	L	P	G	V	G	.	.	.	.	V	V	N	A	R	F	V	K	P	L	D	E	E	M	L	R	E	V	G	G	R	A	R	A	L	I	T	V	E	D	N	T	V	V	G	G	F	G	G	A	V	L	E	A	L	N	S	M	N	L	H	P	T	V	R	V	L	G	I	P	D	E
Template Known Secondary structure									T	T		T	T			.	.	.	.									S														S										S	S	S	S												T	T												S	S
Template Predicted Secondary structure																.	.	.	.
Template SS confidence
		518	.	520	.	.	.	.	.	.	.	.	.	530	.					.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.
		634	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G	E	S	A	P	A	D	K	L	F	P	F	F	G	F	T	A	E	N	I	V	A	K	A	H	K	V	L	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	Q	E	H	A	T	A	E	S	V	H	A	R	A	G	I	D	A	P	A	I	R	T	V	L	A	E	L	G	V	D
Template Known Secondary structure					S											T		S											T	T
Template Predicted Secondary structure
Template SS confidence
		594	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.