Phyre 2 alignment of P33570 with c2bp7F

Job Description P33570
Confidence 100.00% Date Thu Jan 5 11:52:13 GMT 2012

Rank 24 Aligned Residues 301

% Identity 15% Template c2bp7F_

PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:2-oxoisovalerate dehydrogenase beta subunit; PDBTitle: new crystal form of the pseudomonas putida branched-chain2 dehydrogenase (e1)

Resolution 2.9 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence	P	A	K	I	A	T	R	K	A	S	Q	N	T	L	N	A	Y	G	P	M	L	P	E	L	L	G	G	S	A	D	L	A	P	S	N	L	T	I	W	K	G	S	V	S	L	K	E	D	P	A	G	N	Y	I	H	Y	G	V	R	E	F	G	M	T	A	I	A	N	G	I	A	H	H	G	G	F	V	P	Y	T
Query Conservation
Alig confidence																																																																											.
Template Conservation																																																																											.
Template Sequence	T	T	T	M	T	M	I	Q	A	L	R	S	A	M	D	V	M	L	E	R	D	D	N	V	V	V	Y	G	Q	D	V	G	Y	F	G	G	V	F	R	C	T	E	G	L	Q	T	K	Y	G	K	S	R	V	F	D	A	P	I	S	E	S	G	I	V	G	T	A	V	G	M	G	A	Y	G	.	L	R	P	V	V
Template Known Secondary structure																						T	T						T	T		S	S	S			T	T	S	T	T	T	T							T	T	T						S																T	.
Template Predicted Secondary structure																																																																											.
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.

	431	.		.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.							.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure			.																.					.	.	.	.	.	.
Query SS confidence			.																.					.	.	.	.	.	.
Query Sequence	A	T	.	F	L	M	F	V	E	Y	A	R	N	A	A	R	M	A	.	A	L	M	K	.	.	.	.	.	.	A	R	Q	I	M	V	Y	T	H	D	S	I	G	L	G	E	D	G	P	T	H	Q	A	V	E	Q	L	A	S	L	R	L	T	P	N	F	S	T	W	R	P	C	D	Q	V	E	A	A	V	G	W
Query Conservation			.																.					.	.	.	.	.	.
Alig confidence			.																.					.	.	.	.	.	.													.
Template Conservation																																										.
Template Sequence	E	I	Q	F	A	D	Y	F	Y	P	A	S	D	Q	I	V	S	E	M	A	R	L	R	Y	R	S	A	G	E	F	I	A	P	L	T	L	R	M	P	C	G	.	G	G	I	Y	G	G	Q	T	H	S	Q	S	P	E	A	M	F	T	Q	V	C	G	L	R	T	V	M	P	S	N	P	Y	D	A	K	G	L	L
Template Known Secondary structure			S		G	G	G		G	G	G						T	T	T	T	T					T	T	T	S	S												.		S	S	S			T	T	S	S				T					T	S	T	T								S
Template Predicted Secondary structure																																										.
Template SS confidence
	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

	503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.																		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	K	L	A	V	E	R	H	N	G	P	T	A	L	I	L	S	R	Q	N	L	A	Q	V	E	R	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	V	K	E	I	A	R	G	G	Y	V	L	K	D	S	G	G	K	P	D	I	I	L	I	A	T	G	S	E	M	E	I	T	L	Q
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation					.																																																										.	.
Template Sequence	I	A	S	I	.	E	C	D	D	P	V	I	F	L	E	P	K	R	L	Y	N	G	P	F	D	G	H	H	D	R	P	V	T	P	W	S	K	H	P	H	S	A	V	P	D	G	Y	Y	T	V	P	L	D	K	A	A	I	T	R	P	G	N	.	.	D	V	S	V	L	T	Y	G	T	T	V	Y	V	A	Q	V
Template Known Secondary structure					.			S	S								G	G	G	S	S	S				S		S	S	S					G	G	G	S	T	T					S	S						T	T									S	.	.	S							T	T
Template Predicted Secondary structure					.																																																										.	.
Template SS confidence
	161	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

	566	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.		.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.									.	.	.	.	630	.		.	.	.	.
Predicted Secondary structure																													.																																	.	.	.	.	.	.	.	.							.
Query SS confidence																													.																																	.	.	.	.	.	.	.	.							.
Query Sequence	A	A	E	K	L	A	G	E	G	R	N	V	R	V	V	S	L	P	S	T	D	I	F	D	A	Q	D	E	.	E	Y	R	E	S	V	L	P	S	N	V	A	A	R	V	A	V	E	A	G	I	A	D	Y	W	Y	K	Y	V	G	L	K	.	.	.	.	.	.	.	.	G	A	I	V	G	M	.	T	G	Y	G
Query Conservation																													.																																	.	.	.	.	.	.	.	.							.
Alig confidence				.	.	.																							.																																	.	.	.	.	.	.	.	.							.
Template Conservation				.	.	.
Template Sequence	A	A	E	.	.	.	E	S	G	V	D	A	E	V	I	D	L	R	S	L	W	P	L	D	L	D	T	I	V	E	S	V	K	K	T	G	R	C	V	V	V	H	E	A	T	R	T	C	G	F	G	A	E	L	V	S	L	V	Q	E	H	C	F	H	H	L	E	A	P	I	E	R	V	T	G	W	D	T	P	Y
Template Known Secondary structure				.	.	.												S				S														S										S	T	T	S													S	T	T	T			S									S	S
Template Predicted Secondary structure				.	.	.
Template SS confidence
	238	.	240				.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

	636	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	S	A	P	A	D	K	L	F	P	F	F	G	F	T	A	E	N	I	V	A	K	A	H	K	V	L	G
Query Conservation
Alig confidence				.	.	.	.
Template Conservation				.	.	.	.
Template Sequence	P	H	A	.	.	.	.	Q	E	W	A	Y	F	P	G	P	S	R	V	G	A	A	L	K	K	V	M	E
Template Known Secondary structure		S	T	.	.	.	.	T					S														T
Template Predicted Secondary structure				.	.	.	.
Template SS confidence
	315	.	.					.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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