Job Description P33570 Confidence 100.00% Date Thu Jan 5 11:52:13 GMT 2012 Rank 22 Aligned Residues 300 % Identity 19% Template c1um9D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:2-oxo acid dehydrogenase beta subunit; PDBTitle: branched-chain 2-oxo acid dehydrogenase (e1) from thermus2 thermophilus hb8 in apo-form Resolution 2.20 Å

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		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		I	A	T	R	K	A	S	Q	N	T	L	N	A	Y	G	P	M	L	P	E	L	L	G	G	S	A	D	L	A	P	S	N	L	T	I	W	K	G	S	V	S	L	K	E	D	P	A	G	N	Y	I	H	Y	G	V	R	E	F	G	M	T	A	I	A	N	G	I	A	H	H	G	G	F	V	P	Y	T	A	T	.
Query Conservation																																																																																	.
Alig confidence																																																																									.								.
Template Conservation																																																																									.
Template Sequence		M	T	M	V	Q	A	L	N	R	A	L	D	E	E	M	A	K	D	P	R	V	V	V	L	G	E	D	V	G	K	R	G	G	V	F	L	V	T	E	G	L	L	Q	K	Y	G	P	D	R	V	M	D	T	P	L	S	E	A	A	I	V	G	A	A	L	G	M	A	A	H	G	.	L	R	P	V	A	E	I	Q
Template Known Secondary structure																				T	T						T	T		S	S	S			T	T	S	T	T	T	T							T	T	T						S																T	.								S
Template Predicted Secondary structure																																																																									.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450							.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
Predicted Secondary structure																	.				.	.	.	.	.	.
Query SS confidence																	.				.	.	.	.	.	.
Query Sequence		F	L	M	F	V	E	Y	A	R	N	A	A	R	M	A	.	A	L	M	.	.	.	.	.	.	K	A	R	Q	I	M	V	Y	T	H	D	S	I	G	L	G	E	D	G	P	T	H	Q	A	V	E	Q	L	A	S	L	R	L	T	P	N	F	S	T	W	R	P	C	D	Q	V	E	A	A	V	G	W	K	L	A
Query Conservation																	.				.	.	.	.	.	.
Alig confidence																	.				.	.	.	.	.	.														.
Template Conservation																																								.
Template Sequence		F	A	D	Y	I	F	P	G	F	D	Q	L	V	S	Q	V	A	K	L	R	Y	R	S	G	G	Q	F	T	A	P	L	V	V	R	M	P	S	G	.	G	G	V	R	G	G	H	H	H	S	Q	S	P	E	A	H	F	V	H	T	A	G	L	K	V	V	A	V	S	T	P	Y	D	A	K	G	L	L	K	A	A
Template Known Secondary structure			G	G	G	G	G	G	G							T	T	T	T					T	T	T	S	S												.		S	S				S	S	S	S									T	S	T	T								S
Template Predicted Secondary structure																																								.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		506	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.		.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		V	E	R	H	N	G	P	T	A	L	I	L	S	R	Q	N	L	A	Q	V	E	R	.	T	P	D	Q	V	K	E	I	A	R	G	G	Y	V	L	K	D	S	G	G	K	P	D	I	I	L	I	A	T	G	S	E	M	E	I	T	L	Q	A	A	E	K	L	A	G	E	G	R	N	V	R	V	V	S	L	P	S
Query Conservation																								.
Alig confidence			.																					.																					.	.
Template Conservation			.																																										.	.
Template Sequence		I	.	R	D	E	D	P	V	V	F	L	E	P	K	R	L	Y	R	S	V	K	E	E	V	P	E	E	D	Y	T	L	P	I	G	K	A	A	L	R	R	E	G	K	.	.	D	L	T	L	I	C	Y	G	T	V	M	P	E	V	L	Q	A	A	A	E	L	A	K	A	G	V	S	A	E	V	L	D	L	R	T
Template Known Secondary structure			.			S	S								G	G	G	S	S	S							S	S						T	T									S	.	.	S							G	G	G														T	T
Template Predicted Secondary structure			.																																										.	.
Template SS confidence
		162		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.			.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		585	.	.	.	.	590	.	.	.		.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.									.	.	.	.	630	.		.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.
Predicted Secondary structure											.																																	.	.	.	.	.	.	.	.							.
Query SS confidence											.																																	.	.	.	.	.	.	.	.							.
Query Sequence		T	D	I	F	D	A	Q	D	E	.	E	Y	R	E	S	V	L	P	S	N	V	A	A	R	V	A	V	E	A	G	I	A	D	Y	W	Y	K	Y	V	G	L	K	.	.	.	.	.	.	.	.	G	A	I	V	G	M	.	T	G	Y	G	E	S	A	P	A	D	K	L	F	P	F	F	G	F	T	A	E	N	I
Query Conservation											.																																	.	.	.	.	.	.	.	.							.
Alig confidence											.																																	.	.	.	.	.	.	.	.							.								.	.	.	.
Template Conservation																																																																		.	.	.	.
Template Sequence		L	M	P	W	D	Y	E	A	V	M	N	S	V	A	K	T	G	R	V	V	L	V	S	D	A	P	R	H	A	S	F	V	S	E	V	A	A	T	I	A	E	D	L	L	D	M	L	L	A	P	P	I	R	V	T	G	F	D	T	P	Y	P	Y	A	.	.	.	.	Q	D	K	L	Y	L	P	T	V	T	R	I
Template Known Secondary structure				T														S										S	T	T															G	G	G		S	S									S	S				S	T	.	.	.	.	T					S
Template Predicted Secondary structure																																																																		.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.					.	.	.	.	.	.	.	310	.	.	.	.
		655	.	.	.	.	660	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	K	A	H	K	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	N	A	A	K	R	A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		315	.	.	.	.	320	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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