Job Description P33570 Confidence 100.00% Date Thu Jan 5 11:52:13 GMT 2012 Rank 20 Aligned Residues 304 % Identity 17% Template c1ni4D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:pyruvate dehydrogenase e1 component: beta PDBTitle: human pyruvate dehydrogenase Resolution 1.95 Å

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		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	A	T	R	K	A	S	Q	N	T	L	N	A	Y	G	P	M	L	P	E	L	L	G	G	S	A	D	L	A	P	S	N	L	T	I	W	K	G	S	V	S	L	K	E	D	P	A	G	N	Y	I	H	Y	G	V	R	E	F	G	M	T	A	I	A	N	G	I	A	H	H	G	G	F	V	P	Y	T	A	T
Query Conservation
Alig confidence																																																																										.
Template Conservation																																																																										.
Template Sequence		Q	V	T	V	R	D	A	I	N	Q	G	X	D	E	E	L	E	R	D	E	K	V	F	L	L	G	E	E	V	A	Q	Y	D	G	A	Y	K	V	S	R	G	L	W	K	K	Y	G	D	K	R	I	I	D	T	P	I	S	E	X	G	F	A	G	I	A	V	G	A	A	X	A	G	.	L	R	P	I	C	E	F
Template Known Secondary structure																					T	T						T	T		S	T	T			T	T	S	T	T	T	T							T	T	T						S															T	T	.
Template Predicted Secondary structure																																																																										.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80
			433	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.							.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
Predicted Secondary structure		.																.					.	.	.	.	.	.
Query SS confidence		.																.					.	.	.	.	.	.
Query Sequence		.	F	L	M	F	V	E	Y	A	R	N	A	A	R	M	A	.	A	L	M	K	.	.	.	.	.	.	A	R	Q	I	M	V	Y	T	H	D	S	I	G	L	G	E	D	G	P	T	H	Q	A	V	E	Q	L	A	S	L	R	L	T	P	N	F	S	T	W	R	P	C	D	Q	V	E	A	A	V	G	W	K	L
Query Conservation		.																.					.	.	.	.	.	.
Alig confidence		.																.					.	.	.	.	.	.													.
Template Conservation																																									.
Template Sequence		X	T	F	N	F	S	X	Q	A	I	D	Q	V	I	N	S	A	A	K	T	Y	Y	X	S	G	G	L	Q	P	V	P	I	V	F	R	G	P	N	G	.	A	S	A	G	V	A	A	Q	H	S	Q	C	F	A	A	W	Y	G	H	C	P	G	L	K	V	V	S	P	W	N	S	E	D	A	K	G	L	I	K	S
Template Known Secondary structure		S	S	G	G	G	G	G	G	T							T	T	T	T					T	T	S	S												S	.			S	S			G	G	G										T	S	T	T								S
Template Predicted Secondary structure																																									.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.					530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580
Predicted Secondary structure																											.	.	.	.
Query SS confidence																											.	.	.	.
Query Sequence		A	V	E	R	H	N	G	P	T	A	L	I	L	S	R	Q	N	L	A	Q	V	E	R	T	P	.	.	.	.	D	Q	V	K	E	I	A	R	G	G	Y	V	L	K	D	S	G	G	K	P	D	I	I	L	I	A	T	G	S	E	M	E	I	T	L	Q	A	A	E	K	L	A	G	E	G	R	N	V	R	V	V
Query Conservation																											.	.	.	.
Alig confidence				.																							.	.	.	.																			.	.
Template Conservation				.																																													.	.
Template Sequence		A	I	.	R	D	N	N	P	V	V	V	L	E	N	E	L	X	Y	G	V	P	F	E	F	P	P	E	A	Q	S	K	D	F	L	I	P	I	G	K	A	K	I	E	R	Q	G	T	.	.	H	I	T	V	V	S	H	S	R	P	V	G	H	C	L	E	A	A	A	V	L	S	K	E	G	V	E	C	E	V	I
Template Known Secondary structure				.		S	S	S								T	T	T	T	T											S	T	T					T	T									S	.	.	S							S	T															T	T
Template Predicted Secondary structure				.																																													.	.
Template SS confidence
		160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.			.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		581	.	.	.	.	.	.	.	.	590	.	.	.		.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.										.	.	.	630	.		.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.																																		.	.	.	.	.	.	.	.	.						.
Query SS confidence															.																																		.	.	.	.	.	.	.	.	.						.
Query Sequence		S	L	P	S	T	D	I	F	D	A	Q	D	E	.	E	Y	R	E	S	V	L	P	S	N	V	A	A	R	V	A	V	E	A	G	I	A	D	Y	W	Y	K	Y	V	G	L	K	G	.	.	.	.	.	.	.	.	.	A	I	V	G	M	.	T	G	Y	G	E	S	A	P	A	D	K	L	F	P	F	F	G	F
Query Conservation															.																																		.	.	.	.	.	.	.	.	.						.
Alig confidence															.																																		.	.	.	.	.	.	.	.	.						.										.	.
Template Conservation																																																																									.	.
Template Sequence		N	X	R	T	I	R	P	X	D	X	E	T	I	E	A	S	V	X	K	T	N	H	L	V	T	V	E	G	G	W	P	Q	F	G	V	G	A	E	I	C	A	R	I	X	E	G	P	A	F	N	F	L	D	A	P	A	V	R	V	T	G	A	D	V	P	X	P	Y	A	K	I	.	.	L	E	D	N	S	I	P
Template Known Secondary structure								T														S							S	S		S	T	T	S												S	T	T	G	G	G		S	S									S	S				S	S			.	.				T	T	S
Template Predicted Secondary structure																																																																									.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.			.	.	310	.	.	.	.
		650	.	.	.	.	.	.	.	.	.	660	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	E	N	I	V	A	K	A	H	K	V	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	V	K	D	I	I	F	A	I	K	K	T	L	N
Template Known Secondary structure															T
Template Predicted Secondary structure
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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