Job Description P33570 Confidence 100.00% Date Thu Jan 5 11:52:13 GMT 2012 Rank 25 Aligned Residues 265 % Identity 20% Template c1ik6A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate dehydrogenase; PDBTitle: 3d structure of the e1beta subunit of pyruvate2 dehydrogenase from the archeon pyrobaculum aerophilum Resolution 2.00 Å

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		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	T	R	K	A	S	Q	N	T	L	N	A	Y	G	P	M	L	P	E	L	L	G	G	S	A	D	L	A	P	S	N	L	T	I	W	K	G	S	V	S	L	K	E	D	P	A	G	N	Y	I	H	Y	G	V	R	E	F	G	M	T	A	I	A	N	G	I	A	H	H	G	G	F	V	P	Y	T	A	T	F
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.																															.
Template Conservation																																		.	.	.	.	.	.	.	.	.																															.
Template Sequence		A	N	M	A	K	A	I	N	M	A	L	H	E	E	M	E	R	D	E	R	V	V	V	L	G	E	L	V	T	E	G	L	.	.	.	.	.	.	.	.	.	Y	E	R	F	G	P	E	R	V	I	D	T	P	L	N	E	G	G	I	L	G	F	A	M	G	M	A	M	A	G	.	L	K	P	V	A	E	I	Q
Template Known Secondary structure																				T	T								T	T	T	T		.	.	.	.	.	.	.	.	.						T	T	T						S															T	T	.
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.																															.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.										40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.
		434	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		L	M	F	V	E	Y	A	R	N	A	A	R	M	A	.	A	L	M	K	A	R	Q	I	M	V	Y	T	H	D	S	I	G	L	G	E	D	G	P	T	H	Q	A	V	E	Q	L	A	S	L	R	L	T	P	N	F	S	T	W	R	P	C	D	Q	V	E	A	A	V	G	W	K	L	A	V	E	R	H	N	G	P
Query Conservation																.
Alig confidence					.	.	.									.																.	.	.	.	.	.					.	.	.	.	.	.																													.
Template Conservation					.	.	.																									.	.	.	.	.	.					.	.	.	.	.	.																													.
Template Sequence		F	V	L	.	.	.	G	A	D	E	L	L	N	H	I	A	K	L	R	Y	K	A	P	L	V	V	R	T	P	V	.	.	.	.	.	.	G	S	P	E	.	.	.	.	.	.	A	I	F	V	H	T	P	G	L	V	V	V	M	P	S	T	P	Y	N	A	K	G	L	L	K	A	A	I	.	R	G	D	D	P
Template Known Secondary structure					.	.	.																									.	.	.	.	.	.					.	.	.	.	.	.					T		T	T								S													.		S	S	S
Template Predicted Secondary structure					.	.	.																									.	.	.	.	.	.					.	.	.	.	.	.																													.
Template SS confidence
		87	.	.				90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.							.	.	.	.							.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150
		513	.	.	.	.	.	.	520	.	.	.	.	.		.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		T	A	L	I	L	S	R	Q	N	L	A	Q	V	.	E	R	T	P	D	Q	V	K	E	I	A	R	G	G	Y	V	L	K	D	S	G	G	K	P	D	I	I	L	I	A	T	G	S	E	M	E	I	T	L	Q	A	A	E	K	L	A	G	E	G	R	N	V	R	V	V	S	L	P	S	T	D	I	F	D	A	Q
Query Conservation															.
Alig confidence															.																							.	.																						.	.	.
Template Conservation																																						.	.																						.	.	.
Template Sequence		V	V	F	L	E	P	K	I	L	Y	R	A	P	R	E	E	V	P	E	G	D	Y	V	V	E	I	G	K	A	R	V	A	R	E	G	D	.	.	D	V	T	L	V	T	Y	G	A	V	V	H	K	A	L	E	A	A	E	R	V	.	.	.	K	A	S	V	E	V	V	D	L	Q	T	L	N	P	L	D	F	D
Template Known Secondary structure								G	G	G	S	S									S	S					T	T									S	.	.	S							T	T											T	S	.	.	.	S	S												T	T
Template Predicted Secondary structure																																						.	.																						.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.			.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.				.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		592	.		.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.									.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.
Predicted Secondary structure				.																																	.	.	.	.	.	.	.	.
Query SS confidence				.																																	.	.	.	.	.	.	.	.
Query Sequence		D	E	.	E	Y	R	E	S	V	L	P	S	N	V	A	A	R	V	A	V	E	A	G	I	A	D	Y	W	Y	K	Y	V	G	L	K	.	.	.	.	.	.	.	.	G	A	I	V	G	M	T	G	Y	G	E	S	A	P	A	D	K	L	F	P	F	F	G	F	T	A	E	N	I	V	A	K	A	H	K	V	L
Query Conservation				.																																	.	.	.	.	.	.	.	.
Alig confidence				.																																	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	V	L	K	S	V	S	K	T	G	R	L	I	I	A	H	D	S	P	K	T	G	G	L	G	A	E	V	R	A	L	V	A	E	K	A	L	D	R	L	T	A	P	V	I	R	L	A	G	P	D	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	E	R	I	I	K	A	I	E	Y	V	M
Template Known Secondary structure																					S	T	T	S													S	G	G	G		S	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.															300	.	.	.	.	.	.	.	.	.	310	.	.
		663
Predicted Secondary structure
Query SS confidence
Query Sequence		G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		325

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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