Return to main results Retrieve Phyre Job Id

Job DescriptionP11664
Confidence98.92%DateThu Jan 5 11:32:49 GMT 2012
Rank50Aligned Residues137
% Identity21%Templatec2pt5D_
PDB info PDB header:transferaseChain: D: PDB Molecule:shikimate kinase; PDBTitle: crystal structure of shikimate kinase (aq_2177) from aquifex aeolicus2 vf5
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   46...50.........60.........70.........80.........90.........100.........110.........120.....
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  VFLCAPPGTGKSTLTTFWEYLAQQDPELPAIQTLPMDGFHHYNSWLDAHQLRPFKGAPETFDVAKLTENLRQVVEGDCTW
Query Conservation 


 
 








  
   
        
  
  
                        
   
   
  
  
 
  
Alig confidence 





















.......


























..


















...
Template Conservation 
 
 
  







  

  
.......
   
  
                   ..                   ...
Template Sequence  IYLIGFXCSGKSTVGSLLSRSL. . . . . . . NIPFYDVDEEVQKREGLSIPQIFEKKG. . EAYFRKLEFEVLKDLSEKE. . .
Template Known Secondary structure 

GGG
.......T

T


..TTSS...
Template Predicted Secondary structure 





.......








..


...
Template SS confidence 















































































   3......10.........20.... .....30.........40.........50. ........60.........70
 
   126...130.........140.........150.........160.........170.........180.........190.........200.....
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  PQYDRQKHDPVEDALHVTAPLVIVEGNWLLLDDEKWLELASFCDFSIFIHAPAQILRERLISRKIAGGLTRQVAEAFYAR
Query Conservation 
 

                 




  

        
    
  
 

   
    
 
 

   
 
 
 
      
Alig confidence  ....................










































........








Template Conservation  ....................  

                      
 
    
    

  
........         
Template Sequence  . . . . . . . . . . . . . . . . . . . . NVVISTGGGLGANEEALNFXKSRGTTVFIDIPFEVFLERCRPL. . . . . . . . DEIKNLFEE
Template Known Secondary structure  ....................S

T
S




........
Template Predicted Secondary structure  ....................
















........
Template SS confidence 















































































   71........80.........90.........100.........110... ......120..
 
   206...210.........220.........230
Predicted Secondary structure 










Query SS confidence 
























Query Sequence  TDGPNVERVLMNSRQANLIVEMTEE
Query Conservation          
      

 

    
Alig confidence 






........









Template Conservation         ........ 
  

   
Template Sequence  RRKIYSK. . . . . . . . ADIKVKGEKP
Template Known Secondary structure  TT........SS
SS
Template Predicted Secondary structure 
........





Template SS confidence 
























   133...... 140.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions