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Job DescriptionP13445
Confidence99.76%DateThu Jan 5 11:33:34 GMT 2012
Rank12Aligned Residues119
% Identity23%Templatec3mzyA_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:rna polymerase sigma-h factor; PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   117..120.........130.........140.........150.........160.........170.........180.........190......
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Query Sequence  LDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAE
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Template Sequence  EDLVQEGILGLLKAIKFYDETKS. SFSSFAFLCIRREXISAIRKANT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   45....50.........60....... ..70.........80.........90
 
   197..200.........210.........220.........230.........240.........250.........260.........270......
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Query Sequence  EIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLAR
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QKEEAYLLKEEIEEFKKFSENNFSKFEKEVLTY
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   91........100.........110.........120...
 
   277..280.........290.........300.........310.........320.
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Query Sequence  RFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQG
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Template Sequence  L. . . . . IRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKEEE
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   161 ........170.........180.........190.........200
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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