Job Description P13445 Confidence 79.18% Date Thu Jan 5 11:33:34 GMT 2012 Rank 267 Aligned Residues 113 % Identity 17% Template c2xsdC_ PDB info PDB header:transcription/dna Chain: C: PDB Molecule:pou domain, class 3, transcription factor 1; PDBTitle: crystal structure of the dimeric oct-6 (pou3f1) pou domain2 bound to palindromic more dna Resolution 2.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		193	.	.	.	.	.	.	200	.											.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.
Query Sequence		P	S	A	E	E	I	A	E	Q	.	.	.	.	.	.	.	.	.	.	L	D	K	P	V	D	D	V	S	R	M	L	R	L	N	E	R	I	T	S	V	D	T	P	L	G	G	D	S	E	K	A	L	L	D	I	L	A	D	E	K	E	N	G	P	E	D	T	T	Q	D	D	D	M	K	Q	S	I	V	K	W
Query Conservation											.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.
Template Sequence		P	S	S	D	D	L	E	Q	F	A	K	Q	F	K	Q	R	R	I	K	L	G	F	T	Q	A	D	V	G	L	A	L	G	T	L	Y	G	N	V	F	S	Q	T	T	I	C	R	F	E	A	L	Q	L	.	.	.	.	.	.	.	.	.	.	S	F	K	N	M	C	K	L	K	P	L	L	N	K	W	L	E	E
Template Known Secondary structure																					T	T															S													T	T		S	.	.	.	.	.	.	.	.	.	.	B
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.											300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		L	F	E	L	N	A	K	Q	R	E	V	L	A	R	R	F	G	L	L	G	Y	E	A	.	A	T	L	E	D	V	G	R	E	I	G	L	T	R	E	R	V	R	Q	I	Q	V	E	G	L	R	R	L	R	E
Query Conservation																									.
Alig confidence																									.
Template Conservation
Template Sequence		T	D	S	I	E	V	G	V	K	G	A	L	E	S	H	F	L	K	C	P	K	P	S	A	H	E	I	T	G	L	A	D	S	L	Q	L	E	K	E	V	V	R	V	W	F	C	N	R	R	Q	K	E	K	R
Template Known Secondary structure																					S	S														T																		T	B
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions