Job Description P13445 Confidence 99.85% Date Thu Jan 5 11:33:34 GMT 2012 Rank 10 Aligned Residues 174 % Identity 18% Template c2q1zA_ PDB info PDB header:transcription Chain: A: PDB Molecule:rpoe, ecf sige; PDBTitle: crystal structure of rhodobacter sphaeroides sige in complex with the2 anti-sigma chrr Resolution 2.40 Å

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		72	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		T	A	E	E	E	V	Y	F	A	R	R	A	L	R	.	G	D	V	A	S	R	R	R	M	I	E	S	N	L	R	L	V	V	K	I	A	R	R	Y	G	N	R	G	L	A	L	L	D	L	I	E	E	G	N	L	G	L	I	R	A	V	E	K	F	D	P	E	R	G	F	R	F	S	T	Y	A	T	W	W	I
Query Conservation																.
Alig confidence																.																																																							.
Template Conservation																																																																							.
Template Sequence		D	R	T	D	W	V	A	L	M	R	A	I	R	D	H	R	D	E	A	A	F	A	E	L	F	Q	H	F	A	P	K	V	K	G	F	L	M	K	S	G	S	V	A	S	Q	A	E	E	C	A	Q	D	V	M	A	T	V	W	Q	K	A	H	L	F	D	P	S	R	A	.	S	V	A	T	W	I	F	T	I	A
Template Known Secondary structure			T	T																																				T	T																				S	G	G	G			T	T	T		.
Template Predicted Secondary structure																																																																							.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	T	I	E	R	A	I	M	N	Q	T	R	T	I	R	L	P	I	H	I	V	K	E	L	N	V	Y	L	R	T	A	R	E	L	S	H	K	L	D	H	E	P	S	A	E	E	I	A	E	Q	L	D	K	P	V	D	D	V	S	R	M	L	R	L	N	E	R	I	T	S	V	D	T	P	L	G	G	D	S
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	N	R	R	I	D	G	L	R	K	D	R	Q	P	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	S			T	T	T		S	S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	A	L	L	D	I	L	A	D	E	K	E	N	G	P	E	D	T	T	Q	D	D	D	M	K	Q	S	I	V	K	W	L	F	E	L	N	A	K	Q	R	E	V	L	A	R	R	F	G	L	L	G	Y	E	A	A	T	L	E	D	V	G	R	E	I	G	L	T	R	E	R	V	R	Q	I	Q	V	E	G	L
Query Conservation
Alig confidence		.	.	.																																														.	.	.	.
Template Conservation		.	.	.																																														.	.	.	.
Template Sequence		.	.	.	E	D	L	F	W	G	P	D	S	E	P	D	Q	A	D	V	Y	E	M	Q	Q	E	N	A	R	L	G	R	A	I	A	R	L	P	E	A	Q	R	A	L	I	E	R	A	F	.	.	.	.	F	G	D	L	T	H	R	E	L	A	A	E	T	G	L	P	L	G	T	I	K	S	R	I	R	L	A	L
Template Known Secondary structure		.	.	.							S	S																								T	S													.	.	.	.		S			S	S			S	T	T	T
Template Predicted Secondary structure		.	.	.																																														.	.	.	.
Template SS confidence
					101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		311	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	L	R	E	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	R	L	R	Q	H	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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