Job Description P13445 Confidence 67.63% Date Thu Jan 5 11:33:34 GMT 2012 Rank 376 Aligned Residues 188 % Identity 13% Template c1c9bI_ PDB info PDB header:transcription/dna Chain: I: PDB Molecule:general transcription factor iib; PDBTitle: crystal structure of a human tbp core domain-human tfiib2 core domain complex bound to an extended, modified3 adenoviral major late promoter (admlp) Resolution 2.65 Å

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		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	N	L	R	L	V	V	K	I	A	R	R	Y	G	N	R	G	L	A	L	L	D	L	I	E	E	G	N	L	G	L	I	R	A	V	E	K	F	D	P	E	R	G	F	R	F	S	T	Y	A	T	W	W	I	R	Q	T	I	E	R	A	I	M	N	Q	T	R	T	I	R	L	P	I	H	I	V	K	E	L
Query Conservation
Alig confidence																			.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	R	A	M	M	N	A	F	K	E	I	T	T	M	A	D	R	.	I	N	L	P	R	N	I	V	D	R	T	N	N	L	F	K	Q	V	Y	E	Q	K	S	L	K	G	R	A	N	D	A	I	A	S	A	C	L	Y	I	A	C	R	Q	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		G	G	G															.	T	T																				T		S	T	T	S																	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	Y	L	R	T	A	R	E	L	S	H	K	L	D	H	E	P	S	A	E	E	I	A	E	Q	L	D	K	P	V	D	D	V	S	R	M	L	R	L	N	E	R	I	T	S	V	D	T	P	L	G	G	D	S	E	K	A	L	L	D	I	L	A	D	E	K	E	N	G	P	E	D	T	T	Q	D	D	D	M
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	P	R	T	F	K	E	I	C	A	V	S	R	I	S	K	K	E	I	G	R	C	F	K	L	I	L	K	A	L	E	T	S	V	D	L	I	T	.	T	G	D	F	M	S	R	F	C	S	N	L	C	L	P	K	Q	V	Q	M	A	A	T	H	I	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	T											T	S	S	S																T	T								.	T											T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Template SS confidence
																172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		256	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure										.																			.
Query SS confidence										.																			.
Query Sequence		K	Q	S	I	V	K	W	L	.	F	E	L	N	A	K	Q	R	E	V	L	A	R	R	F	G	L	L	.	G	Y	E	A	A	T	L	E	D	V	G	R	E	I	G	L	T	R	E	R	V	R	Q	I	Q	V	E	G	L	R	R	L	R	E	I	L
Query Conservation										.																			.
Alig confidence										.																			.
Template Conservation
Template Sequence		R	K	A	V	E	L	D	L	V	P	G	R	S	P	I	S	V	A	A	A	A	I	Y	M	A	S	Q	A	S	A	E	K	R	T	Q	K	E	I	G	D	I	A	G	V	A	D	V	T	I	R	Q	S	Y	R	L	I	Y	P	R	A	P	D	L	F
Template Known Secondary structure							T	T		S	T	T																		S	S	S												T														G	G	G					S
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions