Phyre 2 alignment of P42599 with c3v5nA

Job Description P42599
Confidence 100.00% Date Thu Jan 5 12:01:45 GMT 2012

Rank 33 Aligned Residues 303

% Identity 20% Template c3v5nA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: the crystal structure of oxidoreductase from sinorhizobium meliloti

Resolution 2.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.						.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure											.																					.																				.	.								.	.	.	.	.
Query SS confidence											.																					.																				.	.								.	.	.	.	.
Query Sequence	M	I	R	F	A	V	I	G	T	N	.	W	I	T	R	Q	F	V	E	A	A	H	E	S	G	K	Y	K	L	T	A	.	V	Y	S	R	S	L	E	Q	A	Q	H	F	A	N	D	F	S	V	E	.	.	H	L	F	T	S	L	E	.	.	.	.	.	A	M	A	E	S	D	A	I	D	A	V	Y	I	A	S
Query Conservation											.																					.																				.	.								.	.	.	.	.
Alig confidence											.																					.																				.	.								.	.	.	.	.
Template Conservation
Template Sequence	R	I	R	L	G	X	V	G	G	G	A	F	I	G	A	V	H	R	I	A	A	R	L	D	D	H	Y	E	L	V	A	G	A	L	S	S	T	P	E	K	A	E	A	S	G	R	E	L	G	L	D	P	S	R	V	Y	S	D	F	K	E	X	A	I	R	E	A	K	L	K	N	G	I	E	A	V	A	I	V	T
Template Known Secondary structure								S																T	S											S	S												T			G	G	G	B		S													T	T			S						S
Template Predicted Secondary structure
Template SS confidence
	14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.

	72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	N	S	L	H	F	S	Q	T	Q	L	F	L	S	H	K	I	N	V	I	C	E	K	P	L	A	S	N	L	A	E	V	D	A	A	I	A	C	A	R	E	N	Q	V	V	L	F	E	A	F	K	T	A	C	L	P	N	F	H	L	L	R	Q	A	L	P	K	V	G	K	L	R	K	V	F	F	N	Y	C	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence	P	N	H	V	H	Y	A	A	A	K	E	F	L	K	R	G	I	H	V	I	C	D	K	P	L	T	S	T	L	A	D	A	K	K	L	K	K	A	A	D	E	S	D	A	L	F	V	L	T	H	N	Y	T	G	Y	P	X	V	R	Q	A	R	E	X	I	E	N	G	D	I	G	A	V	R	L	V	Q	X	E	Y
Template Known Secondary structure		T	T	S										T	T	T							S	S	S		S	S															S	S							G	G	G	G	S												T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
	96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.

	152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.			.	210	.	.	.	.	.	.	.	.	.	220	.	.						.
Predicted Secondary structure																																											.																.	.															.	.	.	.	.
Query SS confidence																																											.																.	.															.	.	.	.	.
Query Sequence	Y	S	S	R	Y	Q	R	Y	L	D	G	E	N	P	N	T	F	N	P	A	F	S	N	G	S	I	M	D	I	G	F	Y	C	L	A	S	A	V	A	L	F	G	.	E	P	K	S	V	Q	A	T	A	S	L	L	A	S	G	.	.	V	D	A	Q	G	V	V	V	M	D	Y	G	D	F	.	.	.	.	.	S
Query Conservation																																											.																.	.															.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.																.	.															.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	D	W	L	T	E	N	G	G	S	T	G	D	I	G	T	H	A	Y	N	L	G	C	F	V	S	G	L	E	L	E	E	L	A	A	D	L	D	S	F	V	G	G	R	Q	L	D	D	N	A	H	V	L	X	R	F	R	E	K	D	G	T	R	A	K
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	S									T																											S	T	T			S													B	T	T	B
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.

	224	.	.	.	.	.	230	.	.	.	.	.				.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.																				.	.	.	.	280	.
Predicted Secondary structure													.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	V	T	L	Q	H	S	K	V	S	D	S	V	.	.	.	L	A	S	E	I	Q	G	E	A	G	S	L	V	I	E	K	L	S	E	C	Q	K	V	C	F	V	P	R	G	S	Q	M	Q	D	L	T	Q	P	Q	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	N	T	M	L	Y
Query Conservation													.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	G	X	L	W	C	S	Q	V	A	P	G	H	E	N	G	L	X	V	R	V	Y	G	T	K	G	G	L	E	W	T	Q	K	D	P	N	Y	L	W	Y	T	P	F	G	E	P	K	R	L	L	T	R	A	G	A	G	A	S	P	A	A	A	R	V	S	R	I	P	S	G	H	P	E	G	Y	L	E	G	F	A	N
Template Known Secondary structure							S			T	T		S	S									S	S							T	T	S	T	T							T	T	S							T	T	S	T	T							T	T			S		T	T	S
Template Predicted Secondary structure
Template SS confidence
	262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

	282	.	.	.	.	.	.	.	290	.	.	.					.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.
Query SS confidence													.	.	.	.
Query Sequence	E	A	E	L	F	A	T	L	V	D	E	H	.	.	.	.	L	V	D	H	P	G	L	A	V	S	R	I	T	A	K	L	L	T	E	I	R	R	Q	T
Query Conservation													.	.	.	.
Alig confidence													.	.	.	.
Template Conservation
Template Sequence	I	Y	S	E	A	A	R	A	I	Y	A	K	R	A	D	P	S	V	I	Y	P	T	I	D	D	G	X	R	G	X	T	F	V	D	A	C	V	R	S	S
Template Known Secondary structure											T	T				T	T
Template Predicted Secondary structure
Template SS confidence
	342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions