Job Description P42599 Confidence 100.00% Date Thu Jan 5 12:01:45 GMT 2012 Rank 37 Aligned Residues 293 % Identity 15% Template c3uuwB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase with nad(p)-binding rossmann-fold PDBTitle: 1.63 angstrom resolution crystal structure of dehydrogenase (mvim)2 from clostridium difficile. Resolution 1.63 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		I	R	F	A	V	I	G	T	N	W	I	T	R	Q	.	F	V	E	A	A	H	E	S	G	K	Y	K	L	T	A	V	Y	S	R	S	L	E	Q	A	Q	H	F	A	N	D	F	S	V	E	H	L	F	T	S	L	E	A	M	A	E	S	D	A	I	D	A	V	Y	I	A	S	P	N	S	L	H	F	S	Q	T
Query Conservation																.
Alig confidence																.																																			.										.	.
Template Conservation																																																			.										.	.
Template Sequence		I	K	M	G	M	I	G	L	G	S	I	A	Q	K	A	Y	L	P	I	L	T	K	S	E	R	F	E	F	V	G	A	F	T	P	N	K	V	K	R	E	K	I	C	S	D	Y	R	I	M	.	P	F	D	S	I	E	S	L	A	.	.	K	K	C	D	C	I	F	L	H	S	S	T	E	T	H	Y	E	I	I
Template Known Secondary structure										S							T					T	S		S	S	S								S													T			.	B		S	S						.	.	T	T		S
Template Predicted Secondary structure																																																			.										.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	F	L	S	H	K	I	N	V	I	C	E	K	P	L	A	S	N	L	A	E	V	D	A	A	I	A	C	A	R	E	N	Q	V	V	L	F	E	A	F	K	T	A	C	L	P	N	F	H	L	L	R	Q	A	L	P	K	V	G	K	L	R	K	V	F	F	N	Y	C	Q	Y	S	S	R	Y	Q	R	Y	L
Query Conservation
Alig confidence																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	L	L	N	L	G	V	H	V	Y	V	D	K	P	L	A	S	T	V	S	Q	G	E	E	L	I	E	L	S	T	K	K	N	L	N	L	M	V	G	F	N	R	R	F	C	P	M	Y	K	E	I	K	N	N	A	T	E	I	V	S	I	N	I	C	K	H	G	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T							S	S	S	S	S	S															T								G	G	G	G													S											.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.
Predicted Secondary structure																																															.																																	.
Query SS confidence																																															.																																	.
Query Sequence		D	G	E	N	P	N	T	F	N	P	A	F	S	N	G	S	I	M	D	I	G	F	Y	C	L	A	S	A	V	A	L	F	G	E	P	K	S	V	Q	A	T	A	S	L	L	.	A	S	G	V	D	A	Q	G	V	V	V	M	D	Y	G	D	F	S	V	T	L	Q	H	S	K	V	S	D	S	V	L	A	.	S
Query Conservation																																															.																																	.
Alig confidence		.	.	.	.																																										.																																	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	L	N	S	L	R	N	V	R	F	D	S	T	L	I	D	D	Y	I	H	V	I	D	T	A	L	W	L	A	N	E	D	V	E	I	S	G	E	D	L	F	L	T	D	N	K	N	L	I	F	V	S	H	K	L	K	G	K	N	F	S	I	N	T	S	M	H	R	D	S	G	T	K	L	E	Q	V
Template Known Secondary structure		.	.	.	.	B	S				S	S									T														S													T	T													S	S									T	T	B	S	S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.					.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																									.	.	.	.
Query SS confidence																																									.	.	.	.
Query Sequence		E	I	Q	G	E	A	G	S	L	V	I	E	K	L	S	E	C	Q	K	V	C	F	V	P	R	G	S	Q	M	Q	D	L	T	Q	P	Q	H	I	N	.	.	.	.	T	M	L	Y	E	A	E	L	F	A	T	L	V	D	E	H	L	V	D	H	P	G	L	A	V	S	R	I	T	A	K	L	L	T	E	I	R
Query Conservation																																									.	.	.	.
Alig confidence																	.	.	.																						.	.	.	.
Template Conservation																	.	.	.
Template Sequence		E	I	L	S	K	G	K	I	Q	R	V	K	N	L	N	.	.	.	V	L	E	I	E	E	G	G	N	L	T	L	K	Q	S	G	A	W	V	N	I	L	K	Q	K	G	F	E	D	I	S	N	H	F	I	D	C	I	E	N	N	I	K	P	A	I	N	G	E	E	C	I	K	A	Q	R	L	L	E	K	I	I
Template Known Secondary structure						T	T							T	T	T	.	.	.							T	T									T	T								T														T	T				S	S		G	G	G	G	T
Template Predicted Secondary structure																	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.				240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		315	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		302	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions