Return to main results Retrieve Phyre Job Id

Job DescriptionP42599
Confidence95.38%DateThu Jan 5 12:01:45 GMT 2012
Rank468Aligned Residues88
% Identity14%Templatec3uagA_
PDB info PDB header:ligaseChain: A: PDB Molecule:protein (udp-n-acetylmuramoyl-l-alanine:d- PDBTitle: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase
Resolution1.77 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  RFAVIGTNWITRQFVEAAHESGKYKLTAVYSRSLEQAQHFANDFSVEHLFTSLEAMAESDAIDAVYIASPNSLHFSQTQL
Query Conservation 





 
         
       
 

 
     
   
             


     
 
 
 

   
      
Alig confidence 




















.




.






























.



















Template Conservation   
 
 
 
 

 
 
  
   .
  
 .


                            .  
 

 

 
    
 
  
Template Sequence  NVVIIGLGLTGLSCVDFFLAR. GVTPR. VMDTRMTPPGLDKLPEAVERHTGSLNDEWLM. AADLIVASPGIALAHPSLSA
Template Known Secondary structure 


STT.T


.SSSS
TTGGGS
TTS
SS

T.T
S
TTS
TTS
Template Predicted Secondary structure 



.

.











.










Template SS confidence 















































































   7..10.........20....... ..30.. .......40.........50.........60... ......70.........80...
 
   83......90...
Predicted Secondary structure 



Query SS confidence 










Query Sequence  FLSHKINVICE
Query Conservation 

  

 

 
Alig confidence 










Template Conservation 
      
 
 
Template Sequence  AADAGIEIVGD
Template Known Secondary structure  TT

Template Predicted Secondary structure 




Template SS confidence 










   84.....90....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions