Phyre 2 alignment of P42599 with c3moiA

Job Description P42599
Confidence 100.00% Date Thu Jan 5 12:01:45 GMT 2012

Rank 22 Aligned Residues 309

% Identity 17% Template c3moiA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:probable dehydrogenase; PDBTitle: the crystal structure of the putative dehydrogenase from bordetella2 bronchiseptica rb50

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence	I	R	F	A	V	I	G	T	N	W	I	T	R	Q	F	V	.	E	A	A	H	E	S	G	K	Y	K	L	T	A	V	Y	S	R	S	L	E	Q	A	Q	H	F	A	N	D	F	S	V	E	H	L	F	T	S	L	E	A	M	A	E	S	D	A	I	D	A	V	Y	I	A	S	P	N	S	L	H	F	S	Q	T
Query Conservation																	.
Alig confidence																	.																																	.
Template Conservation																																																		.
Template Sequence	I	R	F	G	I	C	G	L	G	F	A	G	S	V	L	M	A	P	A	M	R	H	H	P	D	A	Q	I	V	A	A	C	D	P	N	E	D	V	R	E	R	F	G	K	E	Y	G	I	P	.	V	F	A	T	L	A	E	M	M	Q	H	V	Q	M	D	A	V	Y	I	A	S	P	H	Q	F	H	C	E	H	V
Template Known Secondary structure									S					T	T									T	T									S													T			.			S	S								S			S						S		G	G	G
Template Predicted Secondary structure																																																		.
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.

	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	L	F	L	S	H	K	I	N	V	I	C	E	K	P	L	A	S	N	L	A	E	V	D	A	A	I	A	C	A	R	E	N	Q	V	V	L	F	E	A	F	K	T	A	C	L	P	N	F	H	L	L	R	Q	A	L	P	K	V	G	K	L	R	K	V	F	F	N	Y	C	Q	Y	S	S	R	Y	Q	R	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	V	Q	A	S	E	Q	G	L	H	I	I	V	E	K	P	L	T	L	S	R	D	E	A	D	R	M	I	E	A	V	E	R	A	G	V	H	L	V	V	G	T	S	R	S	H	D	P	V	V	R	T	L	R	A	I	V	Q	E	G	S	V	G	R	V	S	M	L	N	C	F	N	Y	T	D	F	L	Y	R	P	R
Template Known Secondary structure						T	T							S				S																T									G	G	G	S														T	T														G	G	G	S
Template Predicted Secondary structure
Template SS confidence
	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.

	161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.			.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																		.																.	.																												.	.
Query SS confidence																																		.																.	.																												.	.
Query Sequence	D	G	E	N	P	N	T	F	N	P	A	F	S	N	G	S	I	M	D	I	G	F	Y	C	L	A	S	A	V	A	L	F	G	.	E	P	K	S	V	Q	A	T	A	S	L	L	A	S	G	.	.	V	D	A	Q	G	V	V	V	M	D	Y	G	D	F	S	V	T	L	Q	H	S	K	V	S	D	S	V	.	.
Query Conservation																																		.																.	.																												.	.
Alig confidence		.	.	.																														.																.	.																												.	.
Template Conservation		.	.	.
Template Sequence	R	.	.	.	P	E	E	L	D	T	S	K	G	G	G	I	I	Y	N	Q	L	P	H	Q	I	D	S	I	K	T	I	T	G	Q	R	I	T	A	V	R	A	M	T	G	R	L	D	P	K	R	P	T	E	G	N	C	A	A	M	L	T	L	E	D	G	A	C	A	V	M	V	Y	S	G	Y	D	H	F	D	S
Template Known Secondary structure		.	.	.	G	G	G	G		G	G	G	T		S					T																												T	T	S		S											T	T	S										S	S	S	S		G
Template Predicted Secondary structure		.	.	.
Template SS confidence
	162				.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.

																																																									236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	S	E	I	Q	G	E	A	G	S	L	V	I	E	K	L	S	E	C	Q	K	V	C
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation																																																																									.	.	.
Template Sequence	D	E	M	H	F	W	L	A	E	G	G	R	A	K	Q	P	N	H	G	G	A	R	K	V	L	R	Q	L	E	G	D	E	A	E	L	R	R	S	R	Y	G	F	G	G	P	I	S	K	S	D	R	K	Q	P	H	F	G	V	M	L	V	T	C	E	H	A	D	L	R	A	S	P	.	.	.	E	G	V	L	V
Template Known Secondary structure	G	G	G	T	T	T	B		T	T	S	S	B					S	S											S											S	T	T	S	T	T											S							S	S							S	.	.	.	S
Template Predicted Secondary structure																																																																									.	.	.
Template SS confidence
	239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310				.	.	.	.	.

	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	V	P	R	G	S	Q	M	Q	D	L	T	Q	P	Q	H	I	N	T	M	L	Y	E	A	E	L	F	A	T	L	V	D	E	H	L	V	D	H	P	G	L	A	V	S	R	I	T	A	K	L	L	T	E	I	R	R	Q	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence	Y	G	D	E	G	V	R	E	V	P	A	I	T	G	R	G	P	F	S	Q	G	D	T	I	D	E	L	R	D	A	I	A	G	V	A	P	A	L	R	D	A	R	W	G	K	D	T	L	E	V	C	L	A	V	L	E	S	S
Template Known Secondary structure			T	T											S	S	S	T														T	T	S	S			S	S
Template Predicted Secondary structure
Template SS confidence
	322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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