Job Description P42599 Confidence 100.00% Date Thu Jan 5 12:01:45 GMT 2012 Rank 35 Aligned Residues 316 % Identity 15% Template c2nvwB_ PDB info PDB header:transcription Chain: B: PDB Molecule:galactose/lactose metabolism regulatory protein PDBTitle: crystal sctucture of transcriptional regulator gal80p from2 kluyveromymes lactis Resolution 2.10 Å

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		2	.	.	.	.	.	.	.					10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure										.	.	.	.														.																												.	.
Query SS confidence										.	.	.	.														.																												.	.
Query Sequence		I	R	F	A	V	I	G	T	.	.	.	.	N	W	I	T	R	Q	F	V	E	A	A	H	E	.	S	G	K	Y	K	L	T	A	V	Y	S	R	S	L	E	Q	A	Q	H	F	A	N	D	F	S	V	E	.	.	H	L	F	T	S	L	E	A	M	A	E	S	D	A	I	D	A	V	Y	I	A	S	P	N	S
Query Conservation										.	.	.	.														.																												.	.
Alig confidence										.	.	.	.														.																												.	.
Template Conservation
Template Sequence		I	R	V	G	F	V	G	L	T	S	G	K	S	W	V	A	K	T	H	F	L	A	I	Q	Q	L	S	S	Q	F	Q	I	V	A	L	Y	N	P	T	L	K	S	S	L	Q	T	I	E	Q	L	Q	L	K	H	A	T	G	F	D	S	L	E	S	F	A	Q	Y	K	D	I	D	M	I	V	V	S	V	K	V	P
Template Known Secondary structure								S			S	T	T	S					T								T	T	T	T									S	S											T	T		T	T					S									T	T		S						S
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.							.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.																											.
Query SS confidence															.	.	.	.	.	.																											.
Query Sequence		L	H	F	S	Q	T	Q	L	F	L	S	H	K	.	.	.	.	.	.	I	N	V	I	C	E	K	P	L	A	S	N	L	A	E	V	D	A	A	I	A	C	A	R	E	N	.	Q	V	V	L	F	E	A	F	K	T	A	C	L	P	N	F	H	L	L	R	Q	A	L	P	K	V	G	K	L	R	K	V	F	F
Query Conservation															.	.	.	.	.	.																											.
Alig confidence															.	.	.	.	.	.																											.
Template Conservation
Template Sequence		E	H	Y	E	V	V	K	N	I	L	E	H	S	S	Q	N	L	N	L	R	Y	L	Y	V	E	W	A	L	A	A	S	V	Q	Q	A	E	E	L	Y	S	I	S	Q	Q	R	A	N	L	Q	T	I	I	C	L	Q	G	R	K	S	P	Y	I	V	R	A	K	E	L	I	S	E	G	C	I	G	D	I	N	S	I
Template Known Secondary structure													T	T	T	T		S	S								S	S	S	S	S	S													T		T	T								G	G	G	G													T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.																	.	.
Predicted Secondary structure												.																																						.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.																																						.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	Y	C	Q	Y	S	S	R	Y	Q	.	R	Y	L	D	G	E	N	P	N	T	F	N	P	A	F	S	N	G	S	I	M	D	I	G	F	Y	C	L	A	S	A	V	A	L	F	G	E	.	P	K	S	V	Q	A	T	A	S	L	L	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V
Query Conservation												.																																						.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.																																						.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	I	S	G	N	G	G	W	Y	G	Y	E	R	P	M	R	S	P	E	Y	L	Y	D	I	E	S	G	V	N	L	I	S	N	S	F	G	H	T	I	D	V	L	Q	Y	I	T	G	S	Y	F	Q	K	I	N	A	M	I	S	N	N	I	P	T	Q	F	L	L	D	E	N	R	T	K	E	T	I	S	K	T	C
Template Known Secondary structure								S	B	T	S	S				S	S								G	G	G	S		S	T	T	T	T														T																					S					S							S
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.								.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.						.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.																																.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.																																.	.	.	.	.
Query Sequence		D	A	Q	G	V	V	V	M	D	Y	G	D	F	S	V	T	L	Q	H	S	K	V	S	.	.	.	.	.	.	.	D	S	V	L	A	S	E	I	Q	G	E	A	G	S	L	V	I	E	K	L	S	E	C	Q	K	V	C	F	V	P	R	.	.	.	.	.	G	S	Q	M	Q	D	L	T	Q	P	Q	H	I	N
Query Conservation																									.	.	.	.	.	.	.																																.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.																																.	.	.	.	.
Template Conservation
Template Sequence		P	D	H	L	L	F	Q	G	I	L	E	N	G	K	V	P	V	S	C	S	F	K	G	G	T	P	V	K	K	L	T	K	N	L	V	I	D	I	H	G	T	K	G	D	L	K	I	E	G	D	A	G	S	N	L	V	L	Y	F	Y	G	I	K	N	G	E	E	E	Q	T	M	E	V	F	H	L	R	N	Y	N
Template Known Secondary structure												T	T	T	T										B	S	S			S	S	S		S								S	S																					S														S	S
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.													.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	M	L	Y	E	A	E	L	F	A	T	L	V	D	E	.	.	.	.	.	.	.	.	.	.	.	.	H	L	V	D	H	P	G	L	A	V	S	R	I	T	A	K	L	L	T	E	I	R	R	Q	T
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	V	V	G	N	I	L	R	I	Y	E	S	I	A	D	Y	H	F	L	G	K	F	D	K	Q	G	F	R	F	E	G	F	P	T	F	K	D	A	I	I	L	H	R	L	I	D	A	V	F	R	S	D
Template Known Secondary structure																				T							T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions