Job Description P75876 Confidence 94.55% Date Thu Jan 5 12:15:21 GMT 2012 Rank 350 Aligned Residues 77 % Identity 16% Template c3trkA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:nonstructural polyprotein; PDBTitle: structure of the chikungunya virus nsp2 protease Resolution 2.40 Å

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		292	.	.	.	.	.	.	.	300			.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		E	K	F	D	V	I	V	M	D	.	.	P	P	K	F	V	E	N	K	S	Q	L	M	G	A	C	R	G	Y	K	D	I	N	M	L	A	I	Q	L	L	N	E	G	G	I	L	L	T	F	S	C	S	G	L	M	T	S	D	L	F	Q	K	I	I	A	D	A	A	I	D	A	G	R	D	V	Q	F	I	E	Q
Query Conservation											.	.
Alig confidence											.	.																																																	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.
Template Sequence		G	R	Y	D	L	V	V	I	N	I	H	T	P	F	R	I	H	H	Y	Q	Q	C	V	D	H	A	X	K	L	Q	X	L	G	G	D	S	L	R	L	L	K	P	G	G	S	L	L	I	R	A	Y	G	Y	A	D	R	T	S	E	.	.	.	.	.	.	R	V	I	C	V	L	G	R	K	F	R	S	S	R	A
Template Known Secondary structure																	S	S																			G	G	G	G																S					.	.	.	.	.	.								T	T
Template Predicted Secondary structure																																																													.	.	.	.	.	.
Template SS confidence
		1212	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270							.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.
		370	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	Q	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	P	P	C
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		1286	.	.	.	1290

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions