Job Description P75876 Confidence 97.97% Date Thu Jan 5 12:15:21 GMT 2012 Rank 310 Aligned Residues 154 % Identity 16% Template c3pvcA_ PDB info PDB header:oxidoreductase, transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of apo mnmc from yersinia pestis Resolution 2.31 Å

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		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240														.	.	.	.	.	.	.	.	.	250				.	.	.	.	.	.	.	.											.	260	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.									.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.									.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.
Query Sequence		R	V	L	N	C	F	S	Y	T	G	G	F	A	V	S	A	L	M	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	C	S	Q	V	V	S	V	D	.	.	.	T	S	Q	E	A	L	D	I	.	.	.	.	.	.	.	.	.	.	A	R	Q	N	V	E	L	N	.	.	.	.	.	.	.	.	.	.
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.									.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.									.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	F	A	E	T	G	F	G	T	G	L	N	F	L	T	L	W	R	D	F	A	L	F	R	Q	Q	S	P	N	A	T	L	R	R	L	H	Y	I	S	F	E	K	Y	P	L	H	V	A	D	L	A	S	A	H	A	R	W	P	E	L	A	S	F	A	E	Q	L	R	A	Q	W	P	L	P	L	A	G	C	H	R
Template Known Secondary structure									T	T	S																		T	T	S	S											S	S												T	T		G	G	G										T						S
Template Predicted Secondary structure
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
					267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure		.	.	.																						.
Query SS confidence		.	.	.																						.
Query Sequence		.	.	.	K	L	D	L	S	K	A	E	F	V	R	D	D	V	F	K	L	L	R	T	Y	.	R	D	R	G	E	K	F	D	V	I	V	M	D	P	P	K	F	V	E	N	K	S	Q	L	M	G	A	C	R	G	Y	K	D	I	N	M	L	A	I	Q	L	L	N	E	G	G	I	L	L	T	F	S	C	S	G
Query Conservation		.	.	.																						.
Alig confidence		.	.	.																						.															.	.										.	.	.	.	.	.																								.
Template Conservation																																									.	.										.	.	.	.	.	.																								.
Template Sequence		I	L	L	A	D	G	A	I	T	L	D	L	W	F	G	D	V	N	T	L	L	P	T	L	D	D	S	L	N	N	Q	V	D	A	W	F	L	D	G	.	.	F	A	P	N	P	D	X	W	N	.	.	.	.	.	.	E	Q	L	F	N	A	X	A	R	X	T	R	P	G	G	T	F	S	T	F	T	A	A	.
Template Known Secondary structure					T	T	T	T								S						G	G	G			G	G	G	T	T									S	.	.	S					T	T		S	.	.	.	.	.	.																				S				.
Template Predicted Secondary structure																																									.	.										.	.	.	.	.	.																								.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.			180	.	.	.	.	.	.	.	.							.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.															.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	M	T	S	D	L	F	Q	K	I	I	A	D	A	A	I	D	A	G	R	D	V	Q	F	I	E	Q	F	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	A	D	H	P	V	I	A	T	Y	P	E	G	L	Y	L	K	G	F	A	C
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	G	F	V	R	R	G	L	Q	Q	A	G	F	N	V	T	K	V	K	G	F	G	Q	K	R	E	X	L	T	G	T	L	P	Q	Q	I	H	A	P	T	A	P	W	Y	H	R	P	A	A	T	R	C	D	D	I	A	I	I
Template Known Secondary structure		.	.	.	.	.	.	.	.										T	T									S	S	S	S										S								G	G	G						S			S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions