Job Description P75876 Confidence 99.12% Date Thu Jan 5 12:15:21 GMT 2012 Rank 236 Aligned Residues 168 % Identity 14% Template c3khkA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:type i restriction-modification system PDBTitle: crystal structure of type-i restriction-modification system2 methylation subunit (mm_0429) from methanosarchina mazei. Resolution 2.55 Å

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		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.			.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.																	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	H	G	H	K	T	G	Y	Y	L	D	Q	R	D	S	R	L	A	T	R	R	Y	.	.	V	E	N	K	R	V	L	N	C	F	S	Y	T	G	G	F	A	V	S	A	L	M	G	G	C	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	V	S	V	D	T	S	Q	E	A	L	D	I
Query Conservation																								.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	G	K	Q	G	G	Q	Y	Y	T	P	K	S	I	V	T	L	I	V	E	M	L	E	P	Y	K	G	R	V	Y	D	P	A	M	G	S	G	G	F	F	V	S	S	D	K	F	I	E	K	H	A	N	V	K	H	Y	N	A	S	E	Q	K	K	Q	I	S	V	Y	G	Q	E	S	N	P	T	T	W	K	L
Template Known Secondary structure		T	T	T			S	T	T	T																		S						S	S		T	T																			T	S						G	G	G
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.																			.	.	.	.	.	.	320
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	Q	N	V	E	L	N	K	L	D	L	S	K	A	E	F	V	R	D	D	V	F	K	L	L	R	T	Y	R	D	R	G	E	K	F	D	V	I	V	M	D	P	P	K	F	V	E	N	K	S	Q	L	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	C	R	G	Y	K	D
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.											.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.											.	.	.
Template Sequence		A	A	M	N	M	V	I	R	G	I	D	.	F	N	F	G	K	K	N	A	D	S	.	.	.	F	L	D	D	Q	H	P	D	L	R	A	D	F	V	M	T	N	P	P	F	N	M	K	D	W	W	H	E	K	L	A	D	D	P	R	W	T	I	N	T	N	K	R	I	L	T	P	P	T	G	N	A	N	F	A
Template Known Secondary structure									T	T			.		B			S	S	S			T	.	.	.	T	T	S		S		T	T												S	S			S				G	G	G	T	T		G	G	G													T	T		T
Template Predicted Secondary structure													.											.	.	.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.		.	310	.	.	.	.	.	.	.	.				.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		I	N	M	L	A	I	Q	L	L	N	E	G	G	I	L	L	T	F	S	C	S	G	L	M	.	T	S	D	L	F	Q	K	I	I	A	D	A	A	I	D	A	G	R	D	V	Q	F	I	E
Query Conservation																										.
Alig confidence																										.
Template Conservation
Template Sequence		W	M	L	H	M	L	Y	H	L	A	P	T	G	S	M	A	L	L	L	A	N	G	S	M	S	S	N	T	N	N	E	G	E	I	R	K	T	L	V	E	Q	D	L	V	E	C	M	V	A
Template Known Secondary structure									T													T							G	G	G											T	T
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions