Job Description P75876 Confidence 99.43% Date Thu Jan 5 12:15:21 GMT 2012 Rank 157 Aligned Residues 193 % Identity 12% Template c3gjyA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of a probable spermidine synthase from2 corynebacterium glutamicum atcc 13032 Resolution 1.47 Å

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		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.						220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.																											.	.	.	.	.
Query SS confidence																															.																											.	.	.	.	.
Query Sequence		E	G	M	E	L	T	Q	G	P	V	T	G	E	L	P	P	A	L	L	P	I	E	E	H	G	M	K	L	L	.	V	D	I	Q	H	G	H	K	T	G	Y	Y	L	D	Q	R	D	S	R	L	A	T	R	R	Y	V	.	.	.	.	.	E	N	K	R	V	L	N	C	F	S	Y	T	G	G	F	A	V	S	A
Query Conservation																															.																											.	.	.	.	.
Alig confidence																															.																											.	.	.	.	.
Template Conservation
Template Sequence		E	G	E	Y	S	V	I	E	L	E	A	D	S	Y	T	T	D	G	W	L	I	S	I	N	G	V	P	S	S	H	I	V	L	G	Q	P	Q	A	L	E	F	E	Y	X	R	W	I	A	T	G	A	R	A	F	I	D	A	H	Q	D	A	S	K	L	R	I	T	H	L	G	G	G	A	C	T	X	A	R	Y	F
Template Known Secondary structure				S	S	S								S	S	S	T	T							T	T								T	T		T	T				S																		S		G	G	G							S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		239	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		L	M	G	.	G	C	S	Q	V	V	S	V	D	T	S	Q	E	A	L	D	I	A	R	Q	N	V	E	L	N	K	L	D	L	S	K	A	E	F	V	R	D	D	V	F	K	L	L	R	T	Y	R	D	R	G	E	K	F	D	V	I	V	M	D	P	P	K	F	V	E	N	K	S	Q	L	M	G	A	C	R	G
Query Conservation					.
Alig confidence					.																										.	.																						.	.																							.	.	.	.
Template Conservation																															.	.																						.	.																							.	.	.	.
Template Sequence		A	D	V	Y	P	Q	S	R	N	T	V	V	E	L	D	A	E	L	A	R	L	S	R	E	W	F	D	I	P	.	.	R	A	P	R	V	K	I	R	V	D	D	A	R	X	V	A	E	S	F	T	P	.	.	A	S	R	D	V	I	I	R	D	V	F	A	G	A	I	T	P	Q	N	F	T	T	.	.	.	.
Template Known Secondary structure					S	T	T								S												S				.	.		T	T	T						S								T			T	.	.	T										S	T	T	S				G	G	G	S	B	.	.	.	.
Template Predicted Secondary structure																															.	.																						.	.																							.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	D	I	N	M	L	A	I	Q	L	L	N	E	G	G	I	L	L	T	F	S	C	S	G	L	M	T	S	D	L	F	Q	K	I	I	A	D	A	A	I	D	A	G	R	D	V	Q	F	I	E
Query Conservation
Alig confidence		.																										.	.
Template Conservation		.																										.	.
Template Sequence		.	V	E	F	F	E	H	C	H	R	G	L	A	P	G	G	L	Y	V	A	N	C	G	D	H	S	.	.	D	L	R	G	A	K	S	E	L	A	G	X	X	E	V	F	E	H	V	A	V	I	A
Template Known Secondary structure		.																									T	.	.	T																S
Template Predicted Secondary structure		.																										.	.
Template SS confidence
			177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions