Job Description P75876 Confidence 99.82% Date Thu Jan 5 12:15:21 GMT 2012 Rank 25 Aligned Residues 282 % Identity 14% Template c3c6kC_ PDB info PDB header:transferase Chain: C: PDB Molecule:spermine synthase; PDBTitle: crystal structure of human spermine synthase in complex2 with spermidine and 5-methylthioadenosine Resolution 1.95 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.								.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.
Query Sequence		K	D	G	L	D	S	Y	R	L	I	A	G	E	S	D	G	L	P	G	I	T	I	D	R	F	G	N	F	L	V	L	Q	L	L	S	A	G	A	E	Y	Q	R	A	A	L	I	S	A	L	Q	T	L	Y	P	E	C	S	I	Y	D	R	S	D	V	A	V	R	.	.	.	.	.	.	.	K	K	E	G	M	E
Query Conservation																																																																					.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.																						.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.
Template Sequence		N	G	S	F	A	N	L	R	I	Y	P	H	G	L	V	L	L	D	L	Q	S	Y	D	Q	G	K	E	E	I	D	S	I	L	N	K	V	E	E	R	M	K	.	.	.	.	.	E	L	S	Q	G	R	V	K	R	L	P	P	I	V	R	G	G	A	I	D	R	Y	W	P	T	A	D	G	R	L	V	E	Y	D
Template Known Secondary structure		T	S									S	S	S																													.	.	.	.	.																S		S	S			B				T	T					B
Template Predicted Secondary structure																																											.	.	.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.						.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																									.										.	.
Query SS confidence																																									.										.	.
Query Sequence		L	T	Q	G	P	V	T	G	E	L	P	P	A	L	L	P	I	E	E	H	G	M	K	L	L	V	D	I	Q	H	G	H	K	T	G	Y	Y	L	D	.	Q	R	D	S	R	L	A	T	R	.	.	R	Y	V	E	N	K	R	V	L	N	C	F	S	Y	T	G	G	F	A	V	S	A	L	M	G	G	C	S	Q
Query Conservation																																									.										.	.
Alig confidence																																									.										.	.
Template Conservation
Template Sequence		I	D	E	V	V	Y	D	E	D	S	P	Y	Q	N	I	K	I	L	H	S	K	Q	F	G	N	I	L	I	L	S	G	D	V	N	L	A	E	S	D	L	A	Y	T	R	A	I	M	G	S	G	K	E	D	Y	T	G	K	D	V	L	I	L	G	G	G	D	G	G	I	L	C	E	I	V	K	L	K	P	K	M
Template Known Secondary structure												S	S									T	T	T							T	T						T	T									T	T	T	T					T	T									T	T									T	T			S
Template Predicted Secondary structure
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		V	V	S	V	D	T	S	Q	E	A	L	D	I	A	R	Q	N	V	E	L	.	N	K	L	D	L	S	K	A	E	F	V	R	D	D	V	F	K	L	L	R	T	Y	R	D	R	G	E	K	F	D	V	I	V	M	D	P	P	K	F	V	E	N	K	S	Q	L	M	G	A	C	R	G	Y	K	D	I	N	M	L
Query Conservation																						.
Alig confidence																						.																																														.	.
Template Conservation																																																																				.	.
Template Sequence		V	T	M	V	E	I	D	Q	M	V	I	D	G	C	K	K	Y	M	R	K	L	D	N	L	K	G	D	C	Y	Q	V	L	I	E	D	C	I	P	V	L	K	R	Y	A	K	E	G	R	E	F	D	Y	V	I	N	D	L	T	A	V	P	I	S	T	S	P	.	.	S	T	W	E	F	L	R	L	I	L	D	L
Template Known Secondary structure							S																	S	S	B		S	S						S												T	T												S	S							.	.
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.			.	.	.	.	.	.	290	.	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	Q	L	L	N	E	G	G	I	L	L	T	F	S	C	S	G	L	M	T	S	D	L	F	Q	K	I	I	A	D	A	A	I	D	A	G	R	D	V	Q	F	I	E	Q	F	R	Q	A	A	D	H	P	V	I	A	T	Y	P	E	G	L	Y	L	K	G	F	A
Query Conservation
Alig confidence																						.	.																								.	.	.	.	.	.
Template Conservation																						.	.																								.	.	.	.	.	.
Template Sequence		S	M	K	V	L	K	Q	D	G	K	Y	F	T	Q	G	N	C	V	N	L	.	.	T	E	A	L	S	L	Y	E	E	Q	L	G	R	L	Y	C	P	V	E	F	S	K	E	.	.	.	.	.	.	I	V	C	V	P	S	Y	L	E	L	W	V	F	Y	T	V	W
Template Known Secondary structure					T														T	T		.	.												T	S	S	S	S								.	.	.	.	.	.					G	G	G	S	S
Template Predicted Secondary structure																						.	.																								.	.	.	.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.							.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions