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Job DescriptionP75876
Confidence100.00%DateThu Jan 5 12:15:21 GMT 2012
Rank11Aligned Residues314
% Identity12%Templatec3bt7A_
PDB info PDB header:transferase/rnaChain: A: PDB Molecule:trna (uracil-5-)-methyltransferase; PDBTitle: structure of e. coli 5-methyluridine methyltransferase trma2 in complex with 19 nucleotide t-arm analogue
Resolution2.43 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   15....20.........30.........40.........50.........60.........70.........80.........90....
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Query Sequence  LLRRHPWVFSGAVARMEGKASLGETIDIVDHQGKWLARGAYSPASQIRARVWTFDPSESIDIAFFSRRLQQAQKWRDWLA
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Template Sequence  VFRSPVSHYRMRAEFRIWHDGDDLYH. . . . . . . . . . . . IIFDQQTKSRIRVDSFPAASE. . . . . . . . LINQLMTAMIAGV
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   36...40.........50.........60. ........70.........80.. .......90.....
 
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Query Sequence  QKDGLDSYRLIAGESDGLPGITIDRFGNFLVLQLLSAGAEYQRAALISALQTLYPECSIYDRSDVAVRKKEGMELTQGPV
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Template Sequence  RNNPVLRHKLFQ. . . . . . IDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYID
Template Known Secondary structure  TT
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Query Sequence  TGELPPALLPIEEHGMKLLVDIQHGHKTGYYLDQRDSRLATRRYV. ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQ
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Template Sequence  . . . . . . ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARN. FDRVLATEIAK
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   170.........180.........190.........200.........210.........220.........230. ........240..
 
   254.....260.........270.........280......... 290.........300.........310.........320.
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Query Sequence  EALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD. . . . . . . . . . . . RGEKFDVIVMDPPKFVENKSQLMGACRGYKDI
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Template Sequence  PSVAAAQYNIAANHID. . NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETE. . . . . . . . . .
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   322.......330.........340.........350.........360.........370.........380.........390...
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Query Sequence  NMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADHPVIATYPEGLYLKGFAC
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Template Sequence  . . . . . KMVQAYPRILYISCNPETLCKNLETL. . . . . . SQTHKVERL. . . . ALFDQ. . . . . FPYTHHMQCGVL
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   311........320.........330...... ...340..... ....350 .........360..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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