Job Description P75876 Confidence 100.00% Date Thu Jan 5 12:15:21 GMT 2012 Rank 12 Aligned Residues 299 % Identity 17% Template c2vs1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:uncharacterized rna methyltransferase pyrab10780; PDBTitle: the crystal structure of pyrococcus abyssi trna (uracil-54,2 c5)-methyltransferase in complex with s-adenosyl-l-3 homocysteine Resolution 2.1 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	H	P	W	V	F	S	G	A	V	A	R	M	E	G	K	A	S	L	G	E	T	I	D	I	V	D	H	Q	G	K	W	L	A	R	G	A	Y	S	P	A	S	Q	I	R	A	R	V	W	T	F	D	P	S	E	S	I	D	I	A	F	F	S	R	R	L	Q	Q	A	Q	K	W	R	D	W	L	A	Q	K
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.																.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.																.	.	.	.	.	.	.	.	.
Template Sequence		S	P	K	I	F	G	H	R	N	R	I	D	L	A	I	T	K	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	F	R	E	.	K	W	W	K	I	V	D	I	D	E	P	V	F	G	K	.	.	.	.	.	.	.	.	.	T	S	R	E	A	I	E	R	L	K	E	F	I	E	E
Template Known Secondary structure			S		S	S	S		B	S								T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.		T	T										S		T	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.																.	.	.	.	.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.																	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.										140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120				.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence		D	G	L	D	S	Y	R	L	I	A	G	E	S	D	G	L	P	G	I	T	I	D	R	F	.	.	.	G	N	F	L	V	L	Q	L	L	S	A	G	A	E	Y	Q	R	A	A	L	I	S	A	L	Q	T	L	Y	P	E	C	S	I	Y	D	R	S	D	V	A	V	R	K	K	E	G	M	E	L	T	Q	G	P
Query Conservation																										.	.	.
Alig confidence															.											.	.	.																		.	.	.	.	.	.	.	.																										.
Template Conservation															.																															.	.	.	.	.	.	.	.																										.
Template Sequence		E	K	I	S	V	W	N	I	K	K	D	E	G	.	F	L	R	Y	M	V	L	R	E	G	K	F	T	E	E	V	M	V	N	F	V	T	K	E	G	N	L	P	D	P	.	.	.	.	.	.	.	.	T	N	Y	F	D	F	D	S	I	Y	W	S	V	N	R	S	K	S	D	V	S	Y	G	D	I	.	E	R
Template Known Secondary structure			T			B	B	B	T	T	T	T	B		.	S										T	T	T											S	S						.	.	.	.	.	.	.	.	G	G	G			S	S									S	S	S			S					.
Template Predicted Secondary structure															.																															.	.	.	.	.	.	.	.																										.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200									.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	G	E	L	P	P	A	L	L	P	I	E	E	H	G	M	K	L	L	V	D	I	Q	H	G	H	K	T	G	Y	Y	L	D	Q	R	D	S	R	L	A	T	R	R	Y	V	E	N	K	R	V	L	N	C	F	S	Y	T	G	G	F	A	V	S	A	L	M	G	G	C	S	Q	V	V	S	V	D	T	S	Q
Query Conservation
Alig confidence								.	.	.																														.																														.
Template Conservation								.	.	.																														.																														.
Template Sequence		F	W	G	K	E	F	.	.	.	I	R	E	R	L	D	D	V	D	Y	L	I	H	P	N	S	F	F	Q	T	N	S	Y	Q	A	V	N	L	V	.	R	K	V	S	E	L	V	E	G	E	K	I	L	D	M	Y	S	G	V	G	T	F	G	I	Y	L	A	K	R	.	G	F	N	V	K	G	F	D	S	N	E
Template Known Secondary structure						S		.	.	.						T	T							T	T	S				S	B									.									S	S						T		T	T	T								T	T	.	T								S
Template Predicted Secondary structure								.	.	.																														.																														.
Template SS confidence
		228	.	230	.	.	.				.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	L	D	I	A	R	Q	N	V	E	L	N	K	L	D	L	S	K	A	E	F	V	R	D	D	V	F	K	L	L	R	T	Y	R	D	R	G	E	K	F	D	V	I	V	M	D	P	P	K	F	V	E	N	K	S	Q	L	M	G	A	C	R	G	Y	K	D	I	N	M	L	A	I	Q	L	L	N	E	G	G
Query Conservation
Alig confidence																		.	.															.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.					.
Template Conservation																		.	.															.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.					.
Template Sequence		F	A	I	E	M	A	R	R	N	V	E	I	N	N	V	D	.	.	A	E	F	E	V	A	S	D	R	E	V	S	V	K	.	.	.	.	.	.	.	G	F	D	T	V	I	V	D	P	P	R	A	G	L	H	P	R	L	V	K	R	L	N	R	.	.	.	.	.	.	.	.	.	.	.	.	E	K	P	G	.
Template Known Secondary structure														T	T			.	.								T	T	T				T	.	.	.	.	.	.	.	T		S								T	T		S											.	.	.	.	.	.	.	.	.	.	.	.				S	.
Template Predicted Secondary structure																		.	.															.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.					.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.			.	320	.	.	.	.	.	.	.	.	.	330	.	.								.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.													.	.	.	360
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	L	T	F	S	C	S	G	L	M	T	S	D	L	F	Q	K	I	I	A	D	A	A	I	D	A	G	R	D	V	Q	F	I	E	Q	F	R	Q	A	A	D	H	P	V	I	A	T	Y	P	E	G	L	Y	L	K	G	F	A	C	R	V
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.								.	.	.	.						.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.								.	.	.	.						.	.	.	.	.
Template Sequence		V	I	V	Y	V	S	C	N	P	E	T	F	A	R	D	V	K	M	L	.	.	.	.	.	.	.	.	D	Y	R	I	D	E	I	.	.	.	.	V	A	L	D	M	.	.	.	.	.	F	P	H	T	P	H	V	E	L	V	A	K	L	V
Template Known Secondary structure								S												T	.	.	.	.	.	.	.	.	T							.	.	.	.						.	.	.	.	.	S	T	T	S	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.								.	.	.	.						.	.	.	.	.
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.									380	.	.	.	.	.	.					.	.	.	390	.						.	.	.	.	.	.	.	.	400	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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