Job Description P75876 Confidence 98.20% Date Thu Jan 5 12:15:21 GMT 2012 Rank 305 Aligned Residues 134 % Identity 19% Template c2qy6A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0209 protein yfck; PDBTitle: crystal structure of the n-terminal domain of upf0209 protein yfck2 from escherichia coli o157:h7 Resolution 2.00 Å

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		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.														.	.	.	.	.	.	.	.	250				.	.	.	.	.	.	.	.												.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.									.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.									.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Query Sequence		R	V	L	N	C	F	S	Y	T	G	G	F	A	V	S	A	L	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	G	C	S	Q	V	V	S	V	D	.	.	.	T	S	Q	E	A	L	D	I	.	.	.	.	.	.	.	.	.	.	.	A	R	Q	N	V	E	L	N	K	L	D	L	S	.	.	.	.
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.									.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.									.	.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template Conservation
Template Sequence		V	V	A	E	S	G	F	G	T	G	L	N	F	L	T	L	W	Q	A	F	D	Q	F	R	E	A	H	P	Q	A	Q	L	Q	R	L	H	F	I	S	F	E	K	F	P	L	T	R	A	D	L	A	L	A	H	Q	H	W	P	E	L	A	P	W	A	E	Q	L	Q	A	Q	W	P	M	P	L	P	G	C	H	R
Template Known Secondary structure						S			T	T	S																		T	T	S	S											S	S												T	T		G	G	G										T				S		S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
								272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																					.
Query SS confidence		.	.	.	.	.	.																					.
Query Sequence		.	.	.	.	.	.	K	A	E	F	V	R	D	D	V	F	K	L	L	R	T	Y	R	D	R	G	.	E	K	F	D	V	I	V	M	D	P	P	K	F	V	E	N	K	S	Q	L	M	G	A	C	R	G	Y	K	D	I	N	M	L	A	I	Q	L	L	N	E	G	G	I	L	L	T	F	S	C	S	G	L	M
Query Conservation		.	.	.	.	.	.																					.
Alig confidence		.	.	.	.	.	.																					.																						.	.	.	.	.	.																								.	.	.
Template Conservation																																																		.	.	.	.	.	.																								.	.	.
Template Sequence		L	L	L	D	R	V	T	L	D	L	W	F	G	D	I	N	E	L	I	S	Q	L	D	D	S	L	N	Q	K	V	D	A	W	F	L	D	G	F	A	P	A	K	N	P	D	M	W	T	.	.	.	.	.	.	Q	N	L	F	N	A	M	A	R	L	A	R	P	G	G	T	L	A	T	F	T	S	A	.	.	.
Template Known Secondary structure														S						G	G	G	S		G	G	G	T	T									S	S		T	T	T		G	G	G			.	.	.	.	.	.																				S				.	.	.
Template Predicted Secondary structure																																																		.	.	.	.	.	.																								.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.							.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	D	L	F	Q	K	I	I	A	D	A	A	I	D	A	G	R	D	V	Q	F	I	E	Q	F	R
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	G	F	V	R	R	G	L	Q	E	A	G	F	T	M	Q	K	R	K	G	F	G
Template Known Secondary structure		.	.	.	.	.	.											T									S	T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions