Job Description P75876 Confidence 100.00% Date Thu Jan 5 12:15:21 GMT 2012 Rank 10 Aligned Residues 306 % Identity 17% Template c1uwvA_ PDB info PDB header:transferase Chain: A: PDB Molecule:23s rrna (uracil-5-)-methyltransferase ruma; PDBTitle: crystal structure of ruma, the iron-sulfur cluster2 containing e. coli 23s ribosomal rna 5-methyluridine3 methyltransferase Resolution 1.95 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	H	P	W	V	F	S	G	A	V	A	R	M	E	G	K	A	S	L	G	E	T	I	D	I	V	D	H	Q	G	K	W	L	A	R	G	A	Y	S	P	A	S	Q	I	R	A	R	V	W	T	F	D	P	S	E	S	I	D	I	A	F	F	S	R	R	L	Q	Q	A	Q	K	W	R	D	W	L	A	Q	K
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Sequence		A	D	V	P	W	G	Y	R	R	R	A	R	L	S	L	N	Y	L	P	K	T	Q	Q	L	Q	.	.	.	.	.	.	.	.	.	.	X	G	F	R	K	A	G	S	S	D	I	V	D	V	.	.	.	.	K	Q	C	P	I	L	A	P	Q	L	E	A	L	L	P	K	V	R	A	C	L	G	S	L	Q	A	X
Template Known Secondary structure					S	S	S		B	S										T	T	T	T				.	.	.	.	.	.	.	.	.	.					B	T	T	S	S						.	.	.	.	S			T	T	B																T	T		G	G	G
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.											.	.	.	.	150	.	.	.	.	.	.	.	.	.					160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	L	D	S	Y	R	L	I	A	G	E	S	D	G	L	P	G	I	T	I	D	R	F	G	N	F	L	V	L	Q	L	L	S	A	G	A	E	Y	Q	R	A	A	L	I	S	A	L	Q	T	L	Y	P	E	C	S	I	Y	D	R	S	D	V	A	V	R	K	K	E	G	M	E	L	T	Q	G	P	V	T	G
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.
Template Sequence		R	H	L	G	H	V	E	L	V	Q	A	T	S	.	.	.	.	.	.	.	.	.	.	.	.	G	T	L	X	I	L	R	H	T	A	P	L	S	S	A	D	R	E	K	L	E	R	F	S	H	S	E	G	L	D	L	Y	L	A	P	D	.	.	.	.	.	.	.	.	.	.	S	E	I	L	E	T	V	S	G
Template Known Secondary structure		G	G										T	T	.	.	.	.	.	.	.	.	.	.	.	.									S	S																		T							S	S	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.													200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.											.	.	.	.	240	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		E	L	P	P	A	L	L	P	I	E	E	H	G	M	K	L	L	V	D	I	Q	H	G	H	K	T	G	Y	Y	L	D	Q	R	D	S	R	L	A	T	R	R	Y	V	.	.	E	N	K	R	V	L	N	C	F	S	Y	T	G	G	F	A	V	S	A	L	M	G	G	C	S	Q	V	V	S	V	D	T	S	Q	E
Query Conservation																																													.	.
Alig confidence				.	.	.	.																																						.	.																							.
Template Conservation				.	.	.	.																																																														.
Template Sequence		E	X	.	.	.	.	P	W	Y	D	S	N	G	L	R	L	T	F	S	P	R	D	F	I	Q	V	N	A	G	V	N	Q	K	X	V	A	R	A	L	E	W	L	D	V	Q	P	E	D	R	V	L	D	L	F	C	G	X	G	N	F	T	L	P	L	A	T	Q	.	A	A	S	V	V	G	V	E	G	V	P	A
Template Known Secondary structure				.	.	.	.						T	T							S	S	S				S	B																T			T	T							S		T	T	T	T	T						T	T	.	S	S							S
Template Predicted Secondary structure				.	.	.	.																																																														.
Template SS confidence
		245	.					.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	D	I	A	R	Q	N	V	E	L	N	K	L	D	L	S	K	A	E	F	V	R	D	D	V	F	K	L	L	R	T	Y	R	D	R	G	E	K	F	D	V	I	V	M	D	P	P	K	F	V	E	N	K	S	Q	L	M	G	A	C	R	G	Y	K	D	I	N	M	L	A	I	Q	L	L	N	E	G	G	I
Query Conservation
Alig confidence																	.	.																																				.										.	.	.	.	.	.	.	.	.	.	.	.					.
Template Conservation																	.	.																																				.										.	.	.	.	.	.	.	.	.	.	.	.					.
Template Sequence		L	V	E	K	G	Q	Q	N	A	R	L	N	G	L	Q	.	.	N	V	T	F	Y	H	E	N	L	E	E	D	V	T	K	Q	P	W	A	K	N	G	F	D	K	V	L	L	D	P	A	R	A	G	A	.	A	G	V	X	Q	Q	I	I	K	.	.	.	.	.	.	.	.	.	.	.	.	L	E	P	I	.	R
Template Known Secondary structure													T	T			.	.	S								T	T	S			S	S	S	G	G	G	T	T			S								T	T			.										.	.	.	.	.	.	.	.	.	.	.	.				S	.
Template Predicted Secondary structure																	.	.																																				.										.	.	.	.	.	.	.	.	.	.	.	.					.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.			.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.		370	.	.	.	.	.	.	.	.													.	380	.	.		.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	T	F	S	C	S	G	L	M	T	S	D	L	F	Q	K	I	I	A	D	A	A	I	D	A	G	R	D	V	Q	F	I	E	Q	F	R	Q	A	A	D	H	P	V	I	A	T	Y	P	E	G	L	Y	L	K	G	F	A	C
Query Conservation
Alig confidence																	.	.	.	.	.														.	.	.	.						.	.	.	.	.
Template Conservation																	.	.	.	.	.														.	.	.	.						.	.	.	.	.
Template Sequence		I	V	Y	V	S	C	N	P	A	T	L	A	R	D	S	.	.	.	.	.	E	A	L	L	K	A	G	Y	T	I	A	R	L	.	.	.	.	A	X	L	D	X	.	.	.	.	.	F	P	H	T	G	H	L	E	S	X	V	L
Template Known Secondary structure							S										.	.	.	.	.						T	T							.	.	.	.						.	.	.	.	.	S	T	T	S	S
Template Predicted Secondary structure																	.	.	.	.	.														.	.	.	.						.	.	.	.	.
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.						.	400	.	.	.	.	.	.	.	.	.	410	.					.	.	.	.	.						.	.	.	420	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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