Job Description P37682 Confidence 99.65% Date Thu Jan 5 11:56:58 GMT 2012 Rank 23 Aligned Residues 199 % Identity 11% Template c3kosA_ PDB info PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional activator ampr; PDBTitle: structure of the ampr effector binding domain from citrobacter2 freundii Resolution 1.83 Å

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		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	R	V	T	I	Y	A	P	T	G	I	I	T	Y	L	S	K	H	V	I	D	K	I	K	D	I	G	D	I	T	L	S	L	K	T	C	N	L	E	R	N	A	F	Y	E	G	V	E	F	P	D	D	C	D	V	L	I	S	Y	A	P	P	K	D	E	S	L	V	A	S	F	I	T	Q	Y	A	V	T	A
Query Conservation
Alig confidence																																																.	.	.	.	.
Template Conservation																																																.	.	.	.	.
Template Sequence		Q	E	K	L	K	I	G	V	V	G	T	F	A	I	G	C	L	F	P	L	L	S	D	F	K	R	S	Y	P	H	I	D	L	H	I	S	T	H	N	N	R	V	D	P	A	A	.	.	.	.	.	E	G	L	D	Y	T	I	R	Y	G	G	G	A	W	H	D	T	D	A	Q	Y	L	C	S	A	L	X	S	P
Template Known Secondary structure																	T													T	T										S							.	.	.	.	.		T		S								S			T	T
Template Predicted Secondary structure																																																.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.						.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	S	Q	R	Y	L	E	K	H	P	I	S	R	P	D	E	L	E	H	H	S	C	I	L	I	D	S	M	M	I	D	D	A	N	I	W	R	F	N	V	A	G	S	K	E	V	R	D	Y	R	V	K	G	N	Y	V	C	D	N	T	Q	S	A	L	E	L	A	R	N	H	L	G	I	V	F	A	P	D	K
Query Conservation
Alig confidence															.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.
Template Sequence		L	C	S	P	T	L	A	S	Q	I	Q	T	P	.	.	.	.	.	.	.	A	D	I	L	K	F	P	L	L	R	S	Y	R	R	D	E	W	A	L	W	X	Q	T	V	G	E	A	P	P	S	P	T	H	N	V	X	V	F	D	S	S	V	T	X	L	E	A	A	Q	A	G	X	G	V	A	I	A	P	V	R
Template Known Secondary structure			B						T	T		S	S	G	.	.	.	.	.	.	.	G	G	G	G	G	S						S		T	T									T	T						T	T	S						S											T	T	S		B					G	G
Template Predicted Secondary structure															.	.	.	.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180								.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	Q	S	D	L	Q	D	G	T	L	V	P	C	F	Q	Q	P	Y	E	W	W	L	D	L	V	A	I	F	R	K	R	E	Y	Q	P	W	R	V	Q	Y	V	L	D	E	M	L	R	E	I	R	H
Query Conservation
Alig confidence																							.
Template Conservation																							.
Template Sequence		X	F	T	H	L	L	S	S	E	R	I	V	Q	P	F	L	T	Q	I	D	L	.	G	S	Y	W	I	T	R	L	Q	S	R	P	E	T	P	A	X	R	E	F	S	R	W	L	T	G	V	L	H	K
Template Known Secondary structure		G							T	T	S	S	B							B		S	.									T	T	S
Template Predicted Secondary structure																							.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions