 |
Job Description | P64610 | Confidence | 25.91% | Date | Thu Jan 5 12:09:54 GMT 2012 |
Rank | 302 | Aligned Residues | 95 |
% Identity | 16% | Template | c1y8oA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:[pyruvate dehydrogenase [lipoamide]] kinase isozyme 3; |
PDBTitle: crystal structure of the pdk3-l2 complex
|
Resolution | 2.48 Å |
|
 |
  |   |
103 | . | . | . | . | . | . | 110 | . | . | . | . | . | |
. | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | |
. | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | E | E | D | I | A | Q | L | R | Q | L | L | K | . |
Q | L | K | R | Y | L | Q | D | N | R | I | V | T | M | S | L | K | P | Q | N | I | L | C | H | R | I | S | E | S | E | V | I | P | V | V | C | D | . |
N | I | G | E | S | T | L | I | P | L | A | T | W | S | K | W | C | C | L | R | K | Q | E | R | L | W | K | R |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|
|   | . |   |   |
|   |   |
|
|   |   |   |
|
|
|
|
|
|
|
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|
|
| . |
|   |
|   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |
|
|
|   |
|
|
|   |
|
|
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |
|   |
|   |
|   |
|
|
|   |
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|   |
|   |   |   |
|
|
|
|
|
Template Sequence |   |
V | P | S | H | L | F | H | M | L | F | E | L | F | K | N | S | M | R | A | T | V | E | L | Y | E | D | R | K | E | G | Y | P | A | V | K | T | L | V | T | L | G | K | E | D | L | S | I | K | I | S | D | L | G | G | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | P | L | R | K | I | D | R | L | F | N | Y |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S | S |
|
|
|
|  |  |  |  |  |  |  |
| S | S |  |  |  |  |  |  |  |  |
| S |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  | G | G | G | G |
| T |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
237 | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 300 | . | . | . |
  |
  |   |
181 | . | |
. | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 |
Predicted Secondary structure |   |
 |  | . |
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |
|
|
|
Query SS confidence |   |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | I | . |
A | Q | P | A | L | A | I | A | L | Q | K | D | L | Q | P | R | E | S | K | T | L | A | L | T | S | R | E | A |
Query Conservation |   |
  |   | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|   |   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |
|
|   |
|   |   |   |
|   |   |
|
Template Sequence |   |
M | Y | S | P | L | F | G | Y | G | L | P | I | S | R | L | Y | A | R | Y | F | Q | G | D | L | K | L | Y | S | M | E | G |
Template Known Secondary structure |   |
T | T |
|
|
|
| T | T |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
304 | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|