Job Description P37344 Confidence 99.48% Date Thu Jan 5 11:55:23 GMT 2012 Rank 44 Aligned Residues 210 % Identity 15% Template c3u5zM_ PDB info PDB header:dna binding protein/dna Chain: M: PDB Molecule:dna polymerase accessory protein 44; PDBTitle: structure of t4 bacteriophage clamp loader bound to the t4 clamp,2 primer-template dna, and atp analog Resolution 3.50 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	N	L	L	G	E	A	N	S	F	L	E	V	L	E	Q	V	S	H	L	A	P	L	D	K	P	V	L	I	I	G	E	R	G	T	G	K	E	L	I	A	S	R	L	H	Y	L	S	S	R	W	Q	G	P	F	I	S	L	N	C	A	A	L	N	E	N	L	L	D	S	E	L	F	G	H	E	A	G	A
Query Conservation
Alig confidence																						.																													.	.	.
Template Conservation																						.																													.	.	.
Template Sequence		I	D	E	C	I	L	P	A	F	D	K	E	T	F	K	S	I	T	S	K	.	G	K	I	P	H	I	I	L	H	S	P	S	P	G	T	G	K	T	T	V	A	K	A	L	C	H	D	V	.	.	.	N	A	D	M	M	F	V	N	G	S	D	C	K	I	D	F	V	R	G	P	L	T	N	F	A	S	A	A
Template Known Secondary structure		T	T	T	S																	.	S	S									S	S	S		S	S												T	.	.	.	T								G	G	G								T								S
Template Predicted Secondary structure																						.																													.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	G	A	Q	K	R	H	P	G	R	F	E	R	A	D	G	G	T	L	F	L	D	E	L	A	T	A	P	M	M	V	Q	E	K	L	L	R	V	I	E	Y	G	E	L	E	R	V	G	G	S	Q	P	L	Q	V	N	V	R	L	V	C	A	T	N	A	D	L	P	A	M	V	N	E	G	T	F	R	A	D
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template Sequence		S	F	D	G	R	Q	K	.	.	.	.	.	.	.	.	.	.	.	V	I	V	I	D	E	F	D	R	S	G	L	A	E	S	Q	R	H	L	R	S	F	M	E	.	.	.	.	.	.	.	.	.	.	A	Y	S	S	N	C	S	I	I	I	T	A	N	.	.	.	.	.	.	.	N	I	D	G	I	I	K	P
Template Known Secondary structure			T	T					.	.	.	.	.	.	.	.	.	.	.						S				G	G	G													.	.	.	.	.	.	.	.	.	.		T	T	T	T								S	.	.	.	.	.	.	.		G	G	G	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.												.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.											.	.	.	130	.	.	.	.	.	.	.	.	.								140	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	D	R	L	A	F	D	V	V	Q	L	P	P	L	R	E	R	E	S	D	I	M	L	M	A	E	Y	F	A	I	Q	M	C	R	E	I	K	L	P	L	F	P	G	F	T	E	R	A	R	E	T	L	L	N	Y	R	W	P	G	N	I	R	E	L	K	N	V	V	E	R	S	V	Y	R	H	G	T	S	D
Query Conservation
Alig confidence																.	.	.	.																																							.
Template Conservation																.	.	.	.																																							.
Template Sequence		L	Q	S	R	C	R	V	I	T	F	G	Q	P	T	.	.	.	.	D	E	D	K	I	E	M	M	K	Q	M	I	R	R	L	T	E	I	C	K	H	E	G	I	A	I	A	D	M	K	V	V	A	A	L	V	K	K	.	N	F	P	D	F	R	K	T	I	G	E	L	D	S	Y	S	S	K	G	V	L	D	A
Template Known Secondary structure						S					T	T				.	.	.	.																							T				S		S										.	T		S												T		T	T	S				T
Template Predicted Secondary structure																.	.	.	.																																							.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.					.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		245	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	P	L	D	D	I	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	L	S	L	V	T
Template Known Secondary structure		T						T
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions