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Job DescriptionP37344
Confidence98.54%DateThu Jan 5 11:55:23 GMT 2012
Rank103Aligned Residues199
% Identity15%Templatec3qmzA_
PDB info PDB header:motor proteinChain: A: PDB Molecule:cytoplasmic dynein heavy chain; PDBTitle: crystal structure of the cytoplasmic dynein heavy chain motor domain
Resolution6.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  VSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE. NLLDSELFGHEAGAFTGAQKRHPGRFERAD
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Template Sequence  LTDSLHQKYGGCFFGPAGTGKTETVKAFGQNL. . . GRVVVVFNCDDSFDYQVLSRLLVGITQ. . . . . . . . . . . . . . . . . I
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   1782.......1790.........1800.........1810... ......1820.........1830.........1840 .
 
   101........110.........120.... .....130.........140.........150.........160.........170.
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Query Sequence  GGTLFLDELATAPMMVQEKLLRVI. . . . . . . . . EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAF
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Template Sequence  GAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITL. . . . . . . . . . . . LPENLKKSFRE
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   1842.......1850.........1860.........1870.........1880.........1890........ .1900.........
 
   172.......180.........190.........200.........210.........220.........230.........240.........250.
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Query Sequence  DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDII
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Template Sequence  FSM. KSQS. GTIAEMILQIMGFEDSKSLASKIVHFLELLSSKCSSMNHYHF. . GLRTLKGVLRNCSPLISEFGEGEKTVV
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   19191920. .... ....1930.........1940.........1950.........1960....... ..1970.........1980.........1990....
 
   252....
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Query Sequence  IDPFK
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Template Sequence  ESLKR
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   1996...2000
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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