Job Description P37344 Confidence 99.58% Date Thu Jan 5 11:55:23 GMT 2012 Rank 36 Aligned Residues 197 % Identity 19% Template c3eihB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of s.cerevisiae vps4 in the presence of atpgammas Resolution 3.25 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.											.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.
Query Sequence		K	D	N	L	L	G	E	A	N	S	F	L	E	V	L	E	Q	V	S	H	L	.	.	.	.	.	.	.	.	.	.	A	P	L	D	K	P	V	L	I	I	G	E	R	G	T	G	K	E	L	I	A	S	R	L	H	Y	L	S	S	R	W	Q	G	P	F	I	S	L	N	C	A	A	L	N	E	N	L	L	D
Query Conservation																							.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.																													.	.	.									.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.									.	.	.	.	.	.	.	.	.
Template Sequence		W	E	D	V	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	V	K	F	P	H	L	F	K	G	N	R	K	P	T	S	G	I	L	L	Y	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	.	.	.	N	S	T	F	F	S	V	S	.	.	.	.	.	.	.	.	.	S
Template Known Secondary structure		S	T	T	S		S													T						G	G	G			T	T												S	T	T	S												T	T	.	.	.	T								.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.									.	.	.	.	.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.	.										.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.												.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	E	L	F	G	H	E	A	G	A	F	T	G	A	Q	K	R	H	P	G	R	F	E	R	A	D	G	G	T	L	F	L	D	E	L	A	T	A	P	M	M	V	.	.	.	.	.	.	.	.	.	.	.	Q	E	K	L	L	R	V	I	E	Y	G	E	L	E	R	V	G	G	S	Q	P	L	Q	V	N	V	R
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.
Template Sequence		S	D	L	V	S	K	W	M	G	E	S	E	K	L	V	K	Q	L	F	A	M	A	R	E	N	K	P	S	I	I	F	I	D	Q	V	D	A	L	T	G	T	R	G	E	G	E	S	E	A	S	R	R	I	K	T	E	L	L	V	Q	M	N	G	.	.	.	.	.	.	.	.	V	G	N	D	S	Q	G	V	L
Template Known Secondary structure					T	T	T	S	S	S	S		T	T	T										T	T	S	S							S	G	G	G	G					S	S	S	S	S	S	S	S	S	T	T								T	T	S	.	.	.	.	.	.	.	.	T	T	T	T	S		S
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.									.	.	.	.	.	.	.	270	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		L	V	C	A	T	N	A	D	L	P	A	M	V	N	E	G	T	F	R	A	D	L	L	D	R	L	A	F	.	D	V	V	Q	L	P	P	L	R	E	R	E	S	D	I	M	L	M	A	E	Y	F	A	I	Q	M	C	R	E	I	K	L	P	L	F	P	G	F	T	E	R	A	R	E	T	L	L	N	Y	R	W
Query Conservation																														.
Alig confidence								.	.	.	.	.	.	.																.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	G	A	T	N	.	.	.	.	.	.	.	I	P	W	Q	L	D	S	A	I	R	R	R	F	E	R	R	I	Y	I	P	L	P	D	L	A	A	R	T	T	M	F	E	I	N	V	.	.	.	.	.	.	.	.	.	.	.	.	G	D	T	P	C	V	L	T	K	E	D	Y	R	T	L	G	A	M	T	E
Template Known Secondary structure							S	.	.	.	.	.	.	.			T	T	S																															.	.	.	.	.	.	.	.	.	.	.	.	T	T	S															T		T
Template Predicted Secondary structure								.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		272	.	.	.	.	.								.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.													.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	N	I	R	E	L	K	N	V	V	E	R	S	V	Y	R	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Y	S	G	S	D	I	A	V	V	V	K	D	A	L	M	Q	P
Template Known Secondary structure		T															T
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions