Job Description P37344 Confidence 99.66% Date Thu Jan 5 11:55:23 GMT 2012 Rank 27 Aligned Residues 211 % Identity 11% Template c3bosA_ PDB info PDB header:hydrolase regulator,dna binding protein Chain: A: PDB Molecule:putative dna replication factor; PDBTitle: crystal structure of a putative dna replication regulator hda2 (sama_1916) from shewanella amazonensis sb2b at 1.75 a resolution Resolution 1.75 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.		.	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.				.
Query SS confidence					.				.
Query Sequence		A	E	Y	.	K	D	N	.	L	L	G	E	A	N	S	F	L	E	V	L	E	Q	V	S	H	L	A	P	L	D	K	P	V	L	I	I	G	E	R	G	T	G	K	E	L	I	A	S	R	L	H	Y	L	S	S	R	W	Q	G	P	F	I	S	L	N	C	A	A	L	N	E	N	L	L	D	S	E	L	F	G
Query Conservation					.				.
Alig confidence					.				.																	.	.
Template Conservation																										.	.
Template Sequence		D	D	E	T	F	T	S	Y	Y	P	G	N	D	E	L	I	G	A	L	K	S	A	A	S	.	.	G	D	G	V	Q	A	I	Y	L	W	G	P	V	K	S	G	R	T	H	L	I	H	A	A	C	A	R	A	N	E	L	E	R	R	S	F	Y	I	P	L	G	I	H	A	S	I	S	T	A	L	L	E	G	L
Template Known Secondary structure		T	T		S	T	T	T	S																	.	.	T		S		S							S	T	T	S	S															T	T								G	G	G	G	G	G	S		G	G	G	G	T	T	G
Template Predicted Secondary structure																										.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.			.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		H	E	A	G	A	F	T	G	A	Q	K	R	H	P	G	R	F	E	R	A	D	G	G	T	L	F	L	D	E	L	A	T	A	P	.	.	M	M	V	Q	E	K	L	L	R	V	I	E	Y	G	E	L	E	R	V	G	G	S	Q	P	L	Q	V	N	V	R	L	V	C	A	T	N	A	D	L	P	A	M	V	N
Query Conservation																																				.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.														.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Template Sequence		E	Q	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	C	I	D	D	V	D	A	V	A	G	H	P	L	W	E	E	A	I	F	D	L	Y	N	R	.	.	.	.	.	.	.	.	.	V	A	E	Q	K	R	G	S	L	I	V	S	A	S	A	S	P	X	E	A	G	F
Template Known Secondary structure		G	G	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	G	G	G	G	T	T															.	.	.	.	.	.	.	.	.						S								S	S		T	T	T	T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Template SS confidence
		102	.	.	.																				.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.										.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	T	F	R	A	D	L	L	D	R	L	A	F	D	V	V	Q	L	P	P	L	R	E	R	E	S	D	I	M	L	M	A	E	Y	F	A	I	Q	M	C	R	E	I	K	L	P	L	F	P	G	F	T	E	R	A	R	E	T	L	L	N	Y	R	W	P	G	N	I	R	E	L	K	N	V	V	E	R	S	V
Query Conservation
Alig confidence		.	.	.																									.	.	.	.	.	.	.	.	.																												.
Template Conservation		.	.	.																									.	.	.	.	.	.	.	.	.																												.
Template Sequence		.	.	.	V	L	P	D	L	V	S	R	X	H	W	G	L	T	Y	Q	L	Q	P	X	X	D	D	E	.	.	.	.	.	.	.	.	.	K	L	A	A	L	Q	R	R	A	A	X	R	G	L	Q	L	P	E	D	V	G	R	F	L	L	N	R	.	X	A	R	D	L	R	T	L	F	D	V	L	D	R	L	D
Template Known Secondary structure		.	.	.												S										G	G	G	.	.	.	.	.	.	.	.	.												T	T															.	T	T	T
Template Predicted Secondary structure		.	.	.																									.	.	.	.	.	.	.	.	.																												.
Template SS confidence
					154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.										.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		238	.	240	.			.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		Y	R	H	G	.	.	T	S	D	Y	P	L	D	D	I	I	I	D	P	F
Query Conservation						.	.
Alig confidence						.	.
Template Conservation
Template Sequence		K	A	S	X	V	H	Q	R	K	L	T	I	P	F	V	K	E	X	L	R
Template Known Secondary structure								T													T
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions