Job Description P37344 Confidence 99.47% Date Thu Jan 5 11:55:23 GMT 2012 Rank 46 Aligned Residues 190 % Identity 19% Template c2zamA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associating protein 4b; PDBTitle: crystal structure of mouse skd1/vps4b apo-form Resolution 3.50 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.											.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.
Query Sequence		K	D	N	L	L	G	E	A	N	S	F	L	E	V	L	E	Q	V	S	H	L	A	P	L	.	.	.	.	.	.	.	.	.	.	D	K	P	V	L	I	I	G	E	R	G	T	G	K	E	L	I	A	S	R	L	H	Y	L	S	S	R	W	Q	G	P	F	I	S	L	N	C	A	A	L	N	E	N	L	L	D
Query Conservation																										.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.																										.	.	.														.	.	.	.	.
Template Conservation																																																													.	.	.														.	.	.	.	.
Template Sequence		W	S	D	V	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	I	K	F	P	H	L	F	T	G	K	R	T	P	W	R	G	I	L	L	F	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	.	.	.	N	N	S	T	F	F	S	I	S	S	S	D	L	.	.	.	.	.
Template Known Secondary structure		G	G	G	S		S												T							G	G	G	S		S	S					S							S	T	T	S													T	.	.	.	T	T									S	T	T	.	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.														.	.	.	.	.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.				.	.	.	.	.	.	.	.	200	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.				100	.	.	.	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.																.	.
Query SS confidence																											.	.	.																.	.
Query Sequence		S	E	L	F	G	H	E	A	G	A	F	T	G	A	Q	K	R	H	P	G	R	F	E	R	A	.	.	.	D	G	G	T	L	F	L	D	E	L	A	T	A	P	M	.	.	M	V	Q	E	K	L	L	R	V	I	E	Y	G	E	L	E	R	V	G	G	S	Q	P	L	Q	V	N	V	R	L	V	C	A	T	N
Query Conservation																											.	.	.																.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.															.	.	.																.	.													.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	V	S	S	E	K	L	V	K	N	L	F	Q	L	A	R	E	N	K	P	S	I	I	F	I	D	E	I	D	S	S	E	A	A	R	R	I	K	T	E	F	L	V	Q	M	Q	G	.	.	.	.	.	.	.	.	V	G	V	D	N	D	G	I	L	V	L	G	A	T	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	T				T												T		S							S																				T	.	.	.	.	.	.	.	.	S	S	S			T	T								S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.
Template SS confidence
													205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250									.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		A	D	L	P	A	M	V	N	E	G	T	F	R	A	D	L	L	D	R	L	A	.	F	D	V	V	Q	L	P	P	L	R	E	R	E	S	D	I	M	L	M	A	E	Y	F	A	I	Q	M	C	R	E	I	K	L	P	L	F	P	G	F	T	E	R	A	R	E	T	L	L	N	Y	R	W	P	G	N	I	R	E
Query Conservation																							.
Alig confidence		.	.	.	.	.	.	.															.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	I	P	W	V	L	D	S	A	I	R	R	R	F	E	K	R	I	Y	I	P	L	P	E	A	H	A	R	A	A	M	F	R	L	H	L	.	.	.	.	.	.	.	.	.	.	.	.	G	S	T	Q	N	S	L	T	E	A	D	F	Q	E	L	G	R	K	T	D	G	Y	S	G	A	D
Template Known Secondary structure		.	.	.	.	.	.	.			T	T	S									S										S												.	.	.	.	.	.	.	.	.	.	.	.	T	T			B													S			S
Template Predicted Secondary structure		.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
									280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.													.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		229	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	N	V	V	E	R	S	V	Y	R	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	I	I	V	R	D	A	L	M	Q	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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