Job Description P37344 Confidence 99.26% Date Thu Jan 5 11:55:23 GMT 2012 Rank 79 Aligned Residues 219 % Identity 21% Template c2x8aA_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:nuclear valosin-containing protein-like; PDBTitle: human nuclear valosin containing protein like (nvl), c-2 terminal aaa-atpase domain Resolution 2.60 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.												.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	G	E	A	N	S	F	L	E	V	L	E	Q	V	S	H	L	A	P	L	.	.	.	.	.	.	.	.	.	.	.	D	K	P	V	L	I	I	G	E	R	G	T	G	K	E	L	I	A	S	R	L	H	Y	L	S	S	R	W	Q	G	P	F	I	S	L	N	C	A	A	L	N	E	N	L	L	D	S	E
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Conservation																																																											.	.	.
Template Sequence		I	G	A	L	E	D	I	R	E	E	L	T	M	A	I	L	A	P	V	R	N	P	D	Q	F	K	A	L	G	L	V	T	P	A	G	V	L	L	A	G	P	P	G	C	G	K	T	L	L	A	K	A	V	A	N	E	S	.	.	.	G	L	N	F	I	S	V	K	G	P	E	L	L	N	M	Y	V	G	E	S
Template Known Secondary structure																	T					S							T	T					S						S	S	T	T	S													T	.	.	.	T								T	T	T	T		S	S	T	T
Template Predicted Secondary structure																																																											.	.	.
Template SS confidence
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.				640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.				.	.
Predicted Secondary structure																																																																													.	.	.
Query SS confidence																																																																													.	.	.
Query Sequence		L	F	G	H	E	A	G	A	F	T	G	A	Q	K	R	H	P	G	R	F	E	R	A	D	G	G	T	L	F	L	D	E	L	A	T	A	P	M	M	V	Q	E	K	L	L	R	V	I	E	Y	G	E	L	E	R	V	G	G	S	Q	P	L	Q	V	N	V	R	L	V	C	A	T	N	A	D	.	.	.	L	P
Query Conservation																																																																													.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.																	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	E	R	A	V	R	Q	V	F	Q	R	A	K	N	S	A	P	C	V	I	F	F	D	E	V	D	A	L	C	P	S	V	R	V	V	N	Q	L	L	T	E	M	D	G	.	.	.	.	.	.	.	L	E	A	R	Q	Q	V	F	I	M	A	A	T	N	R	P	D	I	I	D	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.														T		S							T		T	T	T				T	T											T	.	.	.	.	.	.	.			S	T	T									S		G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.
Template SS confidence
											660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.								.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	V	N	E	G	T	F	R	A	D	L	L	D	R	L	A	F	D	V	V	Q	L	P	P	L	R	E	R	E	S	D	I	M	L	M	A	E	Y	F	A	I	Q	M	C	R	E	I	K	L	P	L	F	P	G	F	T	E	R	A	R	E	T	L	L	N	Y	R	W	P	G	N	I	R	E	L	K	N	V	V
Query Conservation
Alig confidence												.	.	.	.	.	.	.															.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.															.	.	.	.	.	.	.	.
Template Sequence		A	I	L	R	P	G	R	L	D	K	.	.	.	.	.	.	.	T	L	F	V	G	L	P	P	P	A	D	R	L	A	.	.	.	.	.	.	.	.	I	L	K	T	I	T	K	N	G	T	K	P	P	L	D	A	D	V	N	L	E	A	I	A	G	D	L	R	C	D	C	Y	T	G	A	D	L	S	A	L	V
Template Known Secondary structure					S	T	T	S	S			.	.	.	.	.	.	.						S									.	.	.	.	.	.	.	.						T	T	T	T	B	T	T	B	B		T	T								T		S	G	G	G	S
Template Predicted Secondary structure												.	.	.	.	.	.	.															.	.	.	.	.	.	.	.
Template SS confidence
		733	.	.	.	.	.	.	740	.	.								.	.	.	.	.	.	.	750	.	.	.	.	.	.									.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.
		234	.	.	.	.	.	240				.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure									.	.	.
Query SS confidence									.	.	.
Query Sequence		E	R	S	V	Y	R	H	.	.	.	G	T	S	D	Y	P	L	D	D	I	I	I	D	P	F	K	R	R	P	P
Query Conservation									.	.	.
Alig confidence									.	.	.
Template Conservation
Template Sequence		R	E	A	S	I	C	A	L	R	Q	E	M	L	K	V	S	H	K	H	F	E	E	A	F	K	K	V	R	S	S
Template Known Secondary structure																B										T	T
Template Predicted Secondary structure
Template SS confidence
		798	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions