Job Description P37344 Confidence 95.77% Date Thu Jan 5 11:55:23 GMT 2012 Rank 288 Aligned Residues 68 % Identity 21% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.										.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.												.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure															.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	E	Y	K	D	N	L	L	G	E	A	N	.	.	.	.	.	.	.	.	.	S	F	L	E	V	L	E	Q	V	S	H	L	A	P	L	D	K	P	.	.	.	.	.	.	.	.	.	.	.	V	L	I	I	G	E	R	G	T	G	K	E	L	I	A	S	R	L	H	Y	L	S	S	R	W	Q	G	P	F
Query Conservation															.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	K	E	I	E	R	R	A	L	E	E	K	T	P	K	G	L	S	K	K	E	H	I	I	K	I	V	Y	E	E	L	V	K	L	L	G	E	E	A	K	K	L	E	L	N	P	K	K	Q	N	V	I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P
Template Known Secondary structure		T								S	S	S		S	S		S	S																					S								S	S	S										S	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		61	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	L	N	C	A	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	I	A	A	D	T	Y
Template Known Secondary structure							S
Template Predicted Secondary structure
Template SS confidence
		132	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions