Job Description P37344 Confidence 99.67% Date Thu Jan 5 11:55:23 GMT 2012 Rank 26 Aligned Residues 202 % Identity 16% Template c2hcbC_ PDB info PDB header:replication Chain: C: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of amppcp-bound dnaa from aquifex aeolicus Resolution 3.51 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.		.	.	.		.	.	10	.	.			.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure					.				.						.	.
Query SS confidence					.				.						.	.
Query Sequence		A	E	Y	.	K	D	N	.	L	L	G	E	A	.	.	N	S	F	L	E	V	L	E	Q	V	S	H	L	A	P	L	D	K	P	V	L	I	I	G	E	R	G	T	G	K	E	L	I	A	S	R	L	H	Y	L	S	S	R	W	Q	G	P	F	I	S	L	N	C	A	A	L	N	E	N	L	L	D	S	E	L
Query Conservation					.				.						.	.
Alig confidence					.				.						.	.
Template Conservation
Template Sequence		P	K	Y	T	L	E	N	F	I	V	G	E	G	N	R	L	A	Y	E	V	V	K	E	A	L	E	N	L	G	S	L	Y	N	P	I	F	I	Y	G	S	V	G	T	G	K	T	H	L	L	Q	A	A	G	N	E	A	K	K	R	G	Y	R	V	I	Y	S	S	A	D	D	F	A	Q	A	M	V	E	H	L	K
Template Known Secondary structure		T	T			S	S	S	S				T	T	T										T	T	T	T	T	T	T	S									S	S	S	S	S															T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.			100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		F	G	H	E	A	G	A	F	T	G	A	Q	K	R	H	P	G	R	F	E	R	A	.	.	D	G	G	T	L	F	L	D	E	L	A	T	A	P	M	M	V	Q	E	K	L	L	R	V	I	E	Y	G	E	L	E	R	V	G	G	S	Q	P	L	Q	V	N	V	R	L	V	C	A	T	N	A	D	L	P	A	M
Query Conservation																								.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.									.	.																												.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.
Template Sequence		K	G	.	.	.	.	.	.	.	.	.	.	.	.	T	I	N	E	F	R	N	M	Y	K	S	V	D	L	L	L	L	D	D	V	Q	F	L	S	G	K	E	R	T	Q	I	E	F	F	H	I	F	.	.	.	.	.	.	.	.	N	T	L	Y	L	L	E	K	Q	I	I	L	A	S	D	R	H	P	Q	K	L
Template Known Secondary structure			T	.	.	.	.	.	.	.	.	.	.	.	.											T		S							G	G	G	G	T	T		S											.	.	.	.	.	.	.	.						T	T								S	S		G	G	G
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.
Template SS confidence
		161	.													.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.									200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		V	N	E	G	T	F	R	A	D	L	L	D	R	L	A	F	D	V	V	Q	L	.	.	P	P	L	R	E	R	E	S	D	I	M	L	M	A	E	Y	F	A	I	Q	M	C	R	E	I	K	L	P	L	F	P	G	F	T	E	R	A	R	E	T	L	L	N	Y	R	W	P	G	N	I	R	E	L	K	N	V	V
Query Conservation																							.	.
Alig confidence		.	.	.																			.	.									.	.	.	.	.	.	.	.											.	.	.	.															.	.
Template Conservation		.	.	.																													.	.	.	.	.	.	.	.											.	.	.	.															.	.
Template Sequence		.	.	.	D	G	V	S	D	R	L	V	S	R	F	E	G	G	I	L	V	E	I	E	L	D	N	K	T	R	F	K	.	.	.	.	.	.	.	.	I	I	K	E	K	L	K	E	F	N	.	.	.	.	L	E	L	R	K	E	V	I	D	Y	L	L	E	N	.	.	T	K	N	V	R	E	I	E	G	K	I
Template Known Secondary structure		.	.	.	T	T	S											S									S						.	.	.	.	.	.	.	.									T	T	.	.	.	.															.	.			S
Template Predicted Secondary structure		.	.	.																													.	.	.	.	.	.	.	.											.	.	.	.															.	.
Template SS confidence
					221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.									.	250	.	.	.	.	.	.	.	.					.	260	.	.	.	.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.	280	.	.	.
		234	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	S	V	Y	R	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	I	K	L	K	G
Template Known Secondary structure					T	T	S
Template Predicted Secondary structure
Template SS confidence
		284	.	.	.	.	.	290

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions