Job Description P37344 Confidence 99.51% Date Thu Jan 5 11:55:23 GMT 2012 Rank 41 Aligned Residues 204 % Identity 20% Template c2chgB_ PDB info PDB header:dna-binding protein Chain: B: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c domains 1 and 2 Resolution 2.1 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	N	L	L	G	E	A	N	S	F	L	E	V	L	E	Q	V	S	H	L	A	P	L	D	K	P	V	L	I	I	G	E	R	G	T	G	K	E	L	I	A	S	R	L	H	Y	L	S	S	R	W	Q	G	P	F	I	S	L	N	C	A	A	L	N	E	N	L	L	D	S	E	L	F	G	H	E	A	G	A
Query Conservation
Alig confidence																						.	.
Template Conservation																						.	.
Template Sequence		L	D	E	V	V	G	Q	D	E	V	I	Q	R	L	K	G	Y	V	E	R	.	.	K	N	I	P	H	L	L	F	S	G	P	P	G	T	G	K	T	A	T	A	I	A	L	A	R	D	L	F	G	E	N	W	R	D	N	F	I	E	M	N	A	S	D	E	R	G	I	D	V	V	R	H	K	I	K	E	F	A
Template Known Secondary structure		G	G	G			S														T	.	.	T									S		T	T	S	S														G	G	G	T	G	G	G						T	T		T	T
Template Predicted Secondary structure																						.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	G	A	Q	K	R	H	P	G	R	F	E	R	A	D	G	G	T	L	F	L	D	E	L	A	T	A	P	M	M	V	Q	E	K	L	L	R	V	I	E	Y	G	E	L	E	R	V	G	G	S	Q	P	L	Q	V	N	V	R	L	V	C	A	T	N	A	D	L	P	A	M	V	N	E	G	T	F	R	A	D
Query Conservation
Alig confidence													.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template Sequence		R	T	A	P	I	G	G	A	P	F	K	.	.	.	.	.	.	.	I	I	F	L	D	E	A	D	A	L	T	A	D	A	Q	A	A	L	R	R	T	M	E	M	.	.	.	.	.	.	.	.	.	.	.	Y	S	K	S	C	R	F	I	L	S	C	N	Y	.	.	.	.	.	.	.	V	S	R	I	I	E	P
Template Known Secondary structure		T	S			S	T	T		S			.	.	.	.	.	.	.						T	G	G	G	S															.	.	.	.	.	.	.	.	.	.	.		T	T	T								S		.	.	.	.	.	.	.	G	G	G	S
Template Predicted Secondary structure													.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.								.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.												.	130	.	.	.	.	.	.	.	.	.	140	.								.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	D	R	L	A	F	D	V	V	Q	L	P	P	L	R	E	R	E	S	D	I	M	L	M	A	E	Y	F	A	I	Q	M	C	R	E	I	K	L	P	L	F	P	G	F	T	E	R	A	R	E	T	L	L	N	Y	R	W	P	G	N	I	R	E	L	K	N	V	V	E	R	S	V	Y	R	H	G	T	S	D
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.																	.	.	.	.																.																.	.
Template Conservation																.	.	.	.	.	.	.	.																	.	.	.	.																.																.	.
Template Sequence		I	Q	S	R	C	A	V	F	R	F	K	P	V	P	.	.	.	.	.	.	.	.	K	E	A	M	K	K	R	L	L	E	I	C	E	K	E	G	.	.	.	.	V	K	I	T	E	D	G	L	E	A	L	I	Y	I	S	.	G	G	D	F	R	K	A	I	N	A	L	Q	G	A	A	.	.	A	I	G	E	V
Template Known Secondary structure					T											.	.	.	.	.	.	.	.																T	.	.	.	.																.	T	T														.	.	T	T		S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.																	.	.	.	.																.																.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.									.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.					.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.			.	210	.	.	.
		245	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	P	L	D	D	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	A	D	T	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		214	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions