Job Description P37344 Confidence 99.35% Date Thu Jan 5 11:55:23 GMT 2012 Rank 64 Aligned Residues 198 % Identity 17% Template c1sxjB_ PDB info PDB header:replication Chain: B: PDB Molecule:activator 1 37 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	N	L	L	G	E	A	N	S	F	L	E	V	L	E	Q	V	S	H	L	A	P	L	D	K	P	V	L	I	I	G	E	R	G	T	G	K	E	L	I	A	S	R	L	H	Y	L	S	S	R	W	Q	G	P	F	I	S	L	N	C	A	A	L	N	E	N	L	L	D	S	E	L	F	G	H	E	A	G	A
Query Conservation
Alig confidence																						.	.
Template Conservation																						.	.
Template Sequence		L	S	D	I	V	G	N	K	E	T	I	D	R	L	Q	Q	I	A	K	D	.	.	G	N	M	P	H	M	I	I	S	G	M	P	G	I	G	K	T	T	S	V	H	C	L	A	H	E	L	L	G	R	S	Y	A	D	G	V	L	E	L	N	A	S	D	D	R	G	I	D	V	V	R	N	Q	I	K	H	F	A
Template Known Secondary structure		G	G	G			S		T												S	.	.											S	T	T	S	S														G	G	G										T	T	S			S						T
Template Predicted Secondary structure																						.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	G	A	Q	K	R	H	P	G	R	F	E	R	A	D	G	G	T	L	F	L	D	E	L	A	T	A	P	M	M	V	Q	E	K	L	L	R	V	I	E	Y	G	E	L	E	R	V	G	G	S	Q	P	L	Q	V	N	V	R	L	V	C	A	T	N	A	D	L	P	A	M	V	N	E	G	T	F	R	A	D
Query Conservation
Alig confidence											.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Sequence		Q	K	K	L	H	L	P	P	G	.	.	.	.	.	.	K	H	K	I	V	I	L	D	E	A	D	S	M	T	A	G	A	Q	Q	A	L	R	R	T	M	E	L	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	N	S	T	R	F	A	F	A	C	N	Q	S	N	K	.	.	.	.	.	.	I	I	E	P
Template Known Secondary structure									T	T	.	.	.	.	.	.									S	G	G	G	S							T	T							.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T								S		G	G	G	.	.	.	.	.	.	S
Template Predicted Secondary structure											.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.							.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.													.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.							150	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	D	R	L	A	F	D	V	V	Q	L	P	P	L	R	E	R	E	S	D	I	M	L	M	A	E	Y	F	A	I	Q	M	C	R	E	I	K	L	P	L	F	P	G	F	T	E	R	A	R	E	T	L	L	N	Y	R	W	P	G	N	I	R	E	L	K	N	V	V	E	R	S	V	Y	R	H	G
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.																	.	.	.	.																.
Template Conservation																.	.	.	.	.	.	.	.																	.	.	.	.																.
Template Sequence		L	Q	S	Q	C	A	I	L	R	Y	S	K	L	S	.	.	.	.	.	.	.	.	D	E	D	V	L	K	R	L	L	Q	I	I	K	L	E	D	.	.	.	.	V	K	Y	T	N	D	G	L	E	A	I	I	F	T	A	.	E	G	D	M	R	Q	A	I	N	N	L	Q	S	T	V	A	G	H	G
Template Known Secondary structure				T	T	S										.	.	.	.	.	.	.	.																T	.	.	.	.			B													.	T	T																	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.																	.	.	.	.																.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.									.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.					.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions