Job Description P37344 Confidence 93.27% Date Thu Jan 5 11:55:23 GMT 2012 Rank 393 Aligned Residues 116 % Identity 13% Template c1a1vA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna Resolution 2.20 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																																																	.	.																								.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.																								.	.	.	.	.	.	.	.
Query Sequence		A	P	L	D	K	P	V	L	I	I	G	E	R	G	T	G	K	E	L	I	A	S	R	L	H	Y	L	S	S	R	W	Q	G	P	F	I	S	L	N	C	A	A	L	N	E	N	L	.	.	L	D	S	E	L	F	G	H	E	A	G	A	F	T	G	A	Q	K	R	H	P	G	R	.	.	.	.	.	.	.	.
Query Conservation																																																	.	.																								.	.	.	.	.	.	.	.
Alig confidence																					.	.																											.	.																								.	.	.	.	.	.	.	.
Template Conservation																					.	.
Template Sequence		P	Q	S	F	Q	V	A	H	L	H	A	P	T	G	S	G	K	S	T	.	.	K	V	P	A	A	Y	A	A	Q	G	Y	K	V	L	V	L	N	P	S	V	A	A	T	L	G	F	G	A	Y	M	S	K	A	H	G	V	D	P	N	I	R	T	G	V	R	T	I	T	T	G	S	P	I	T	Y	S	T	Y	G
Template Known Secondary structure			S	S										T	T	S		T	T	T	.	.								T	T	T								S																	S								S	S								S
Template Predicted Secondary structure																					.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
								96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	F	E	R	A	D	G	G	T	L	F	L	D	E	L	A	T	A	P	M	M	V	Q	E	K	L	L	R	V	I	E	Y	G	E	L	E	R	V	G	G	S	Q	P	L	Q	V	N	V	R	L	V	C	A	T	N	A	D	L
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.
Template Sequence		K	F	L	A	D	G	G	S	G	G	A	Y	D	I	I	I	C	D	E	C	H	S	T	D	A	T	S	I	L	G	I	G	T	V	L	D	Q	.	.	.	.	.	.	.	.	.	A	E	T	A	G	A	R	L	V	V	L	A	T	A	T	P	P
Template Known Secondary structure						T	T							S						T	T	T			S														.	.	.	.	.	.	.	.	.	T	T	T	T	T		S							S	S		T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.										.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions