Job Description P77671 Confidence 100.00% Date Thu Jan 5 12:31:31 GMT 2012 Rank 45 Aligned Residues 351 % Identity 21% Template c3ooqC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:amidohydrolase; PDBTitle: crystal structure of amidohydrolase from thermotoga maritima msb8 Resolution 2.06 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																.																				.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.																				.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	I	I	K	N	G	T	V	I	L	E	N	E	.	A	R	V	V	D	I	A	V	K	G	G	K	I	A	A	I	G	Q	D	.	L	G	D	A	K	E	V	M	D	A	S	G	L	V	V	S	P	G	M	V	D	A	H	T	H	I	S	E	P	G	R	S	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																.																				.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.																				.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	I	L	F	K	N	A	T	V	F	P	I	T	S	R	P	F	K	G	D	V	L	V	S	N	G	K	V	E	K	V	G	E	N	I	E	D	P	D	A	E	I	V	D	L	T	G	K	F	L	F	P	G	F	V	D	A	H	S	H	I	G	L	F	E	E	G	V	G	Y	Y	Y	S	D	G	N	E	A	T	D
Template Known Secondary structure													S	S	S											T	T							S					S	S	S						T	T														T	T	T	S		T	T	S		G	G	G			S			T	T	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
												69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	H	W	E	G	Y	E	T	G	T	R	A	A	A	K	G	G	I	T	T	M	I	E	M	P	L	N	Q	L	P	A	T	V	D	R	A	S	I	E	L	K	F	D	A	A	K	G	K	L	T	I	D	A	A	Q	L	G	G	L	V	S	Y	N	I	D	R	L	H	E	L	D
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	V	T	P	H	V	K	A	L	D	G	F	N	P	Q	D	P	A	I	E	R	A	L	A	G	G	V	T	S	V	X	I	V	P	G	S	A	N	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	B		T	T		B	G	G	G	G			T	T										T	T										S	S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	G	V	V	G	F	K	C	F	V	A	T	C	G	D	R	G	I	D	N	D	F	R	D	V	N	D	W	Q	F	F	K	G	A	Q	K	L	G	E	L	G	Q	P	V	L	V	H	C	E	N	A	L	I	C	D	E	L	G	E	E	A	K	R	E	G	R	V	T	A	H	D	Y	V	A	S	R	P	V	F
Query Conservation
Alig confidence		.																																																													.
Template Conservation		.																																																													.
Template Sequence		.	G	G	Q	G	S	V	I	K	F	R	S	I	I	V	E	E	C	I	V	K	D	P	A	G	L	K	X	A	F	G	E	N	P	K	R	V	Y	G	E	R	K	Q	T	P	S	T	R	X	G	T	A	G	V	I	R	D	Y	F	T	K	.	V	K	N	Y	X	K	K	K	E	L	A	Q	K	E	G	K	E	F
Template Known Secondary structure		.									S			S	S																	S										T	T		S		S	S															.														T	T
Template Predicted Secondary structure		.																																																													.
Template SS confidence
			126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		T	E	V	E	A	I	R	R	V	L	Y	L	A	K	V	A	G	C	R	L	H	V	C	H	V	S	S	P	E	G	V	E	E	V	T	R	A	R	Q	E	G	Q	D	V	T	C	E	S	C	P	H	Y	F	V	L	D	T	D	Q	F	E	E	I	G	T	L	A	K	C	S	P	P	I	R	D	L	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																																																					.																									.	.	.	.
Template Conservation																																																					.
Template Sequence		T	E	T	D	L	K	X	E	V	G	E	X	V	L	R	K	K	I	P	A	R	X	H	A	H	R	A	D	D	I	L	T	A	I	R	I	A	E	E	F	G	F	N	L	V	I	E	H	G	T	E	.	A	Y	K	I	S	K	V	L	A	E	K	K	I	P	V	V	V	G	P	L	L	T	F	R	T	K	L	E
Template Known Secondary structure																T	T	S	S								S															T									T	T	.	G	G	G	G							T	T									S	S				S	G	G
Template Predicted Secondary structure																																																					.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
					295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	E	N	Q	K	G	M	W	E	K	L	F	N	G	E	I	D	C	L	V	S	D	H	S	P	C	P	P	E	M	K	A	G	N	I	M	K	A	W	G	G	I	A	G	L	Q	S	C	M	D	V	M	F	D	E	A	V	Q	K	R	G	M	S	L	P	M	F	G	K	L	M	A	T	N	A	A	D	I
Query Conservation		.	.	.
Alig confidence		.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	D	L	T	X	E	T	I	A	K	L	L	K	D	G	V	L	I	A	L	X	C	D	H	P	V	I	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	F	A	T	V	Q	A	A	T	A	X	R	Y	G	A	K	E	E	D	L	L	K	I	L	T	V	N	P	A	K	I
Template Known Secondary structure		G	T	T			T	T								T	T								T	T	T	T	S		G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G								G	G	G	G	T									T	T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.																				.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		372	.	.	.	.		.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		F	G	L	Q	Q	.	K	G	R	I	A	P	G	K	D	A	D	F	V	F	I	Q	P	N	S	S	Y	V	L	T	N	D	D	L	E	Y	R	H	K	V	S	P	Y	V	G	R	T	I	G	A	R	I	T	K	T	I	L	R	G	D	V	I	Y	D	I	E
Query Conservation							.
Alig confidence							.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	G	L	E	D	R	I	G	S	I	E	P	G	K	D	A	D	L	V	V	W	S	G	H	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	D	X	K	S	V	V	E	R	V	Y	I	D	G	V	E	V	F	R	R	E
Template Known Secondary structure		T	T		T	T	T	S	S	S			T	T	S	B							S	S		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	T	T									T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.																					.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.