Job Description P77671 Confidence 100.00% Date Thu Jan 5 12:31:31 GMT 2012 Rank 6 Aligned Residues 442 % Identity 25% Template c3dc8B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:dihydropyrimidinase; PDBTitle: crystal structure of dihydropyrimidinase from sinorhizobium meliloti Resolution 1.85 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																																.	.
Query SS confidence																																																																.	.
Query Sequence		D	L	I	I	K	N	G	T	V	I	L	E	N	E	A	R	V	V	D	I	A	V	K	G	G	K	I	A	A	I	G	Q	D	L	G	D	A	K	E	V	M	D	A	S	G	L	V	V	S	P	G	M	V	D	A	H	T	H	I	S	E	P	.	.	G	R	S	H	W	E	G	Y	E	T	G	T	R	A	A	A
Query Conservation																																																																.	.
Alig confidence																																			.																													.	.
Template Conservation																																			.
Template Sequence		S	T	V	I	K	G	G	T	I	V	T	A	D	L	T	Y	K	A	D	V	K	V	E	G	G	R	I	V	E	I	G	P	N	.	L	S	G	A	E	T	L	D	A	T	G	C	Y	V	M	P	G	G	I	D	P	H	T	H	L	E	M	P	F	M	G	T	Y	S	S	D	D	F	E	S	G	T	R	A	A	L
Template Known Secondary structure							S						S	S											T	T							S	S	.				S						T	T														T	T				T	T				S
Template Predicted Secondary structure																																			.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	G	I	T	T	M	I	E	M	P	L	N	Q	L	P	A	T	V	D	R	A	S	I	E	L	K	F	D	A	A	K	G	K	L	T	I	D	A	A	Q	L	G	G	L	V	S	Y	N	I	D	R	L	H	E	L	D	E	V	G	V	V	G	F	K	C	F	V	A	T	C	G	D	R	G	I	D	N	D	F
Query Conservation
Alig confidence																																																																								.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.
Template Sequence		A	G	G	T	T	M	V	V	D	F	A	L	P	S	G	Q	S	L	L	E	A	L	T	M	W	D	N	K	S	T	R	A	N	C	D	Y	S	F	H	M	A	I	T	W	W	G	E	Q	V	F	N	E	M	E	T	I	V	K	D	K	G	I	N	T	F	H	F	M	A	Y	.	.	.	.	.	.	.	K	G	A
Template Known Secondary structure			T	T																										T	T	T		S	S										S		S														S				B			B	S		S	.	.	.	.	.	.	.	T	T	T
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150								.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	V	N	D	W	Q	F	F	K	G	A	Q	K	L	G	E	L	G	Q	P	V	L	V	H	C	E	N	A	L	I	C	D	E	L	G	E	E	A	K	R	E	G	R	V	T	A	H	D	Y	V	A	S	R	P	V	F	T	E	V	E	A	I	R	R	V	L	Y	L	A	K	V	A	G	C	R	L	H	V	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	M	V	D	D	D	E	M	F	S	S	F	Q	R	C	A	A	L	G	A	L	P	L	V	H	A	E	N	G	D	V	V	A	Q	L	Q	A	K	L	L	A	E	G	N	S	G	P	E	A	H	A	Y	S	R	P	A	E	V	E	G	E	A	A	N	R	A	I	M	I	A	D	M	A	G	C	P	V	Y	I	V
Template Known Secondary structure		T	B																	T		B				B		S															T	T			S							T	S																				T						S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.					.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.
Query SS confidence																																						.	.	.	.
Query Sequence		H	V	S	S	P	E	G	V	E	E	V	T	R	A	R	Q	E	G	Q	D	V	T	C	E	S	C	P	H	Y	F	V	L	D	T	D	Q	.	.	.	.	F	E	E	I	G	T	L	A	K	C	S	P	P	I	R	D	L	E	N	Q	K	G	M	W	E	K	L	F	N	G	E	I	D	C	L	V	S	D	H	S
Query Conservation																																						.	.	.	.
Alig confidence																																						.	.	.	.
Template Conservation
Template Sequence		H	T	S	C	E	Q	A	H	E	A	I	R	R	A	R	A	K	G	M	R	V	F	G	E	P	L	I	Q	H	L	T	L	D	E	T	E	Y	F	D	K	D	W	D	H	A	A	R	R	V	M	S	P	P	F	R	N	K	L	H	Q	D	S	L	W	A	G	L	A	S	G	S	L	Q	V	V	A	T	D	H	C
Template Known Secondary structure		S			S													T	T								B								G	G	G	G	G		S	S							T			S	S					G	G	G											T	S	S				B			B
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		318	.	320	.	.	.				.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.		.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure								.	.	.																																																						.
Query SS confidence								.	.	.																																																						.
Query Sequence		P	C	P	P	E	M	.	.	.	K	A	G	N	I	M	K	A	W	G	G	I	A	G	L	Q	S	C	M	D	V	M	F	D	E	A	V	Q	K	R	G	M	S	L	P	M	F	G	K	L	M	A	T	N	A	A	D	I	F	G	L	Q	Q	.	K	G	R	I	A	P	G	K	D	A	D	F	V	F	I	Q	P
Query Conservation								.	.	.																																																						.
Alig confidence								.	.	.																																																						.
Template Conservation
Template Sequence		A	F	T	T	E	Q	K	R	F	G	V	G	D	F	T	R	I	P	N	G	T	G	G	L	E	D	R	M	P	M	L	W	T	Y	G	V	A	T	G	R	I	T	M	N	E	F	V	A	V	T	S	T	N	I	A	K	I	L	N	I	Y	P	K	K	G	A	I	L	V	G	A	D	A	D	L	V	V	W	D	P
Template Known Secondary structure									G	G	G	T	T		G	G	G	S							T	T	T										T	T	T	T	S	S										T							T	T		T	T	T	S	S			S	T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	S	Y	V	L	T	N	D	D	L	E	Y	R	H	K	V	S	P	Y	V	G	R	T	I	G	A	R	I	T	K	T	I	L	R	G	D	V	I	Y	D	I	E	Q	G	F	P	V	A	P	K	G	Q	F	I	L	K	H	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	R	S	K	T	I	S	A	K	T	Q	Q	S	A	I	D	Y	N	V	F	E	G	K	T	V	T	G	L	P	R	F	T	L	T	R	G	V	V	S	I	E	E	G	T	V	K	T	Q	E	G	H	G	E	F	V	R	R	D	P	F
Template Known Secondary structure									G	G	G		S	S	S	S	S			T	T	T	T													T	T						T	T						T	T				B					S
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.