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Job DescriptionP77671
Confidence100.00%DateThu Jan 5 12:31:31 GMT 2012
Rank26Aligned Residues359
% Identity18%Templatec3be7B_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:zn-dependent arginine carboxypeptidase; PDBTitle: crystal structure of zn-dependent arginine carboxypeptidase
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10....... ..20.........30.........40.........50.........60.........70.
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Query Sequence  DLIIKNGTVILENE. . ARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWE. . . . . . . . . .
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Template Sequence  DFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKINTKDATVISIPDLILIPGLMDSHVHIVGNDSKGEESIADSSHMGT
Template Known Secondary structure 
S
TTT



TTS



SS

TT



SS



SGGGTT

TT
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   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   72.......80.........90.........100.........110.........120.........130.........140.........150
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Query Sequence  . GYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGFKCFVA
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Template Sequence  VWGVVNAEKTLMAGFTTVRNVGAANYADVSVRDAIERGVINGPTMLVSGPALGITGGHC. . . . . . . . . . . . . . . . . DHNL
Template Known Secondary structure  TT


STTTTSS





S
BB
TTSTT.................S


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   85....90.........100.........110.........120.........130.........140... ....
 
   151........160.........170.........180.........190.........200.........210.........220.........230
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Query Sequence  TCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYL
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Template Sequence  LPPEFNYSSEGVVDSPWEARKMVRKNRKYGADLIKFCATGGVM. . . . . . . . . . . . . . . SRNTDVNAKQFTLEEMKAIVDE
Template Known Secondary structure  S
TTT



TTB

ST
S
B

SS...............SSS

TTSB
S
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   148.150.........160.........170.........180.........190 .........200.........210..
 
   231........240.........250.........260.........270.........280.........290...
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Query Sequence  AKVAGCRLHVCHVSSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRD. . . . . . . . . . . . . . . . .
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Template Sequence  AHNHGMKVAAHAHGLIGIKAAIKA. . . . . GVDSVEHASFIDDETIDMAIKNNTVLSMDIFVSDYILGEGAKAGIREESLN
Template Known Secondary structure  TT

S.....T
S
TT

T



STTTT

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   213......220.........230...... ...240.........250.........260.........270.........280.......
 
   294.....300.........310.........320.........330.........340.........350.........360.......
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Query Sequence  . . . . . . LENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMKAWGGIAGLQSCMDVMFDEAVQKRGMSLPMFGKLMATN
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Template Sequence  KERLVGKKQRENFMNAHRRGAIITFGTDAGIFDHGDNAKQF. . . . . . . . . . . . . . . . . . . AYMVEWGMTPLEAIQASTIK
Template Known Secondary structure  T





BTTB
TTGGGG...................TT

TTT
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   288.290.........300.........310.........320........ .330.........340........
 
   368.370.........380.........390.........400.........410.........420.........430.....
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Query Sequence  AADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDI
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Template Sequence  TATLFGIENIGQIKEGFDADIVGVIEN. . . . . . . . . . . . . . . . . PLANIRTLEEVAFVMKEGKVYKRR
Template Known Secondary structure  T

S
SS

TTSB

SS
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GGGTTS

TT

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   349350.........360.........370..... ....380.........390.........
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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