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Job DescriptionP77671
Confidence100.00%DateThu Jan 5 12:31:31 GMT 2012
Rank8Aligned Residues439
% Identity26%Templatec2vr2A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:dihydropyrimidinase; PDBTitle: human dihydropyrimidinase
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60..... ....70.........80.
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Query Sequence  DLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSPGMVDAHTHISEP. . GRSHWEGYETGTRAAA
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Template Sequence  RLLIRGGRVVNDDFSEVADVLVEDGVVRALG. . . . . HLRVLDAAGKLVLPGGIDTHTHMQFPFMGSRSIDDFHQGTKAAL
Template Known Secondary structure  S

SS

TT.....


TTS

TT
B
SSSB
S

TT
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   6...10.........20.........30...... ...40.........50.........60.........70.........80
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  KGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDF
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Template Sequence  SGGTTMIIDFAIPQKGGSLIEAF. ETWRSWADPKVCCDYSLHVAVTWWSDQVKEEMKILVQD. . . KGVNSFKMFMAYKDL
Template Known Secondary structure  TTT


TT

.TTT
SS
S
ST...S


SSSTTT
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   92.......100.........110.... .....120.........130.........140.........150.. .......160.......
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  RDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVC
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Template Sequence  YMVTDLELYEAFSRCKEIGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLYIV
Template Known Secondary structure  TB

T

S
TT

STTS
T

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   168.170.........180.........190.........200.........210.........220.........230.........240.......
 
   242.......250.........260.........270.........280. ........290... ......300.........310......
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Query Sequence  HVSSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEI. . . . GTLAKCSPPIRD. LENQKGMWEKLFNGEIDCLVSDH
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Template Sequence  HVMSKSAAKVIADARRDGKVVYGEPIAASLGTDGTHYWNKEWHHAAHHVMGPPLRPDPSTPDFLMNLLANDDLTTTGTDN
Template Known Secondary structure 

TT

B

SGGGG
SSTT

SS


S
TTTTSS


B

B
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   248.250.........260.........270.........280.........290.........300.........310.........320.......
 
   317..320...... ...330.........340.........350.........360.........370...... ...380.........390..
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Query Sequence  SPCPPEMKAG. . . NIMKAWGGIAGLQSCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQ. KGRIAPGKDADFVFIQ
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Template Sequence  CTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWD
Template Known Secondary structure 



GGGSS
GGGS


B

TTTTTTTSS
TTT
TTTSS

STTSB

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   328.330.........340.........350.........360.........370.........380.........390.........400.......
 
   393......400.........410.........420.........430.........440.........450.
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Query Sequence  PNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILKH
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Template Sequence  PKGTRTISAKTHHQAVNFNIFEGMVCHGVPLVTISRGKVVYEAGVFSVTAGDGKFIPRK
Template Known Secondary structure 

TTT
SSS
S

TTTT
TTTT


TT
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   408.410.........420.........430.........440.........450.........460......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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