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Job DescriptionP77671
Confidence100.00%DateThu Jan 5 12:31:31 GMT 2012
Rank18Aligned Residues387
% Identity18%Templatec2pajA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:putative cytosine/guanine deaminase; PDBTitle: crystal structure of an amidohydrolase from an environmental sample of2 sargasso sea
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10....... ..20.........30...... ...40.........50.........60.........
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Query Sequence  DLIIKNGTVILENE. . . . . . . . . ARVVDIAVKGGKIAAIGQD. LGDAKEVMDASGLVVSPGMVDAHTHISEPGRSH. . . .
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Template Sequence  STLIRNAAAIMTGGRGTADDPSRVPGPDIRIVGDTIDAIGALAPRPGETIVDATDCVIYPAWVNTHHHLFQSLLKGEPFR
Template Known Secondary structure 
BSB



SSSSS
SB




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TT

BT






GGGGG

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   11........20.........30.........40.........50.........60.........70.........80.........90
 
   70.........80.........90.........100.........110.........120.........130.........140.
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Query Sequence  . . . . . . . . WEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVG
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Template Sequence  ALFDERRFRLAARIGLIELARSGCATVADHNYVYYPGMPFDSSAILFEEAEKLGLRFVLLRGG. . . . . . . . . . . . . . . . .
Template Known Secondary structure  GG

TTT





TT
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   108.110.........120.........130.........140.........150.........160.........170
 
   142.......150.........160.........170.........180.........190.........200.........210.........220.
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Query Sequence  VVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEV
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Template Sequence  . . . . . ATQTRQLEADLPTALRPETLDAYVADIERLAARYH. . . . . . . . . . . . . . . . . DASPRAMRRVVMAPTTVLYSISP
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S
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GGG



T
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STT
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   171........180.........190.........200..... ....210.........220........
 
   222.......230.........240.........250.........260.........270.........280.........290.........300.
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Query Sequence  EAIRRVLYLAKVAGCRLHVCHVSSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMW
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Template Sequence  REMRETAAVARRLGLRMHS. HLSGKSPVAFCGEHDWLGSDVWYAHLVKVDADEIALLAQTGTGVAHCPQSNGRLP. . . VR
Template Known Secondary structure  TT
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TT

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   229230.........240....... ..250.........260.........270.........280.........290.........300.. ..
 
   302.......310.........320.........330.........340.........350.........360.........370.........380.
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Query Sequence  EKLFNGEIDCLVSDHSPCPPEMKAGNIMKAWGGIAGLQSCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIA
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Template Sequence  EMADAGVPVSIGVDGAASNEAADMI. . . . . . . . . . . . . . SEVHMTWLAQRARLASIAEVIHWGTAGGARVMGLDEVGKVA
Template Known Secondary structure  TT





S

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TT
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   323......330.........340....... ..350.........360.........370.........380........
 
   382.......390.........400.........410.........420.........430.........440.........450...
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Query Sequence  PGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILKHQQ
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Template Sequence  VGYAADIAVYRLDDPRYFGLHDPAIGPVASG. . . . . GRPSVMALFSAGKRVVVDDLIEGVDI. KELGGEARR
Template Known Secondary structure  TTSB



SGGGTT
SSGGGS
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TTTTB
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   408.410.........420.........430........ .440.........450.........460.... .....470...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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