Return to main results Retrieve Phyre Job Id

Job DescriptionP77671
Confidence100.00%DateThu Jan 5 12:31:31 GMT 2012
Rank2Aligned Residues443
% Identity37%Templatec1gkrA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:non-atp dependent l-selective hydantoinase; PDBTitle: l-hydantoinase (dihydropyrimidinase) from arthrobacter2 aurescens
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30...... ...40.........50.........60.........70 .......
Predicted Secondary structure 














..























.
Query SS confidence 



































. .

































.






Query Sequence  MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQD. . LGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHW. EGYETGT
Query Conservation 
  
 

 
  
          
 
  
 
  

  ..      


  
  
 




 
 
         .       
Alig confidence 

.
































..

































.






Template Conservation 
 .



 
  
          
 
  
 
  

          


  
  
 




 
 
                 
Template Sequence  MF. DVIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPGVVDEHVHIIDMDLKNRYGRFELDS
Template Known Secondary structure 
.TTTTS

TT


TT




GGGTTTS

Template Predicted Secondary structure 

.







































Template SS confidence 















































































   1. .......10.........20.........30.........40.........50.........60.........70.........
 
   78.80.........90.........100.........110.........120.........130.........140.........150.......
Predicted Secondary structure 








































Query SS confidence 















































































Query Sequence  RAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGI
Query Conservation        
 

                                                                      
Alig confidence 




















.



















































.....
Template Conservation        
 
            .                                         
          ..... 
Template Sequence  ESAAVGGITTIIEMPITFPPT. TTLDAFLEKKKQAGQRLKVDFALYGGGVPGNLPEIRKMHDAGAVGFSMMAAS. . . . . V
Template Known Secondary structure  T
S
SSS
S.
S
SSB



TT
TT

B

BSS
S.....B
Template Predicted Secondary structure 










.

















.....
Template SS confidence 















































































   80.........90.........100 .........110.........120.........130.........140.........150.. .
 
   158.160.........170.........180.........190.........200.........210.........220.........230.......
Predicted Secondary structure 






























Query SS confidence 















































































Query Sequence  DNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCR
Query Conservation                                                                           
   
  
Alig confidence 















































































Template Conservation                                                                           
      
Template Sequence  PGMFDAVSDGELFEIFQEIAACGSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAGCR
Template Known Secondary structure  TTTB
B

T
B


TT

SS


Template Predicted Secondary structure 

































Template SS confidence 















































































   155....160.........170.........180.........190.........200.........210.........220.........230....
 
   238.240.........250.........260.........270.........280.........290.........300.........310.......
Predicted Secondary structure 



























Query SS confidence 















































































Query Sequence  LHVCHVSSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHS
Query Conservation                                                     
          
      
     


  
Alig confidence 















































































Template Conservation                
      
                             
                 
     


  
Template Sequence  LIVLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAERIGPYMKVAPPVRSAEMNIRLWEQLENGLIDTLGSDHG
Template Known Secondary structure 



STT


S

GGGGGGG

SS



T





Template Predicted Secondary structure 






























Template SS confidence 















































































   235....240.........250.........260.........270.........280.........290.........300.........310....
 
   318.320....... ..330.........340.........350.........360.........370...... ...380.........390...
Predicted Secondary structure 







...

















.









Query SS confidence 









. . .
















































.
















Query Sequence  PCPPEMKAGN. . . IMKAWGGIAGLQSCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQ. KGRIAPGKDADFVFIQP
Query Conservation            ...                           

  


   
   
  

   . 
 
  
  






 
Alig confidence 









...
















































.
















Template Conservation                     
                    

  


   
   
  


    
 
  

 






 
Template Sequence  GHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNKGRLSLERLVEVMCEKPAKLFGIYPQKGTLQVGSDADLLILDL
Template Known Secondary structure 


GGGTGGGGT
GGGS


B

TTTTGGGTSS
TT
TTTSSS

TTSB

S
Template Predicted Secondary structure 

































Template SS confidence 















































































   315....320.........330.........340.........350.........360.........370.........380.........390....
 
   394.....400.........410.........420.........430.........440.........450
Predicted Secondary structure 



























Query SS confidence 
























































Query Sequence  NSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILK
Query Conservation 
                           
  


 
 

            
     
Alig confidence 
























































Template Conservation 
    
                      
  


 
  
   
        
  
  
Template Sequence  DIDTKVDASQFRSLHKYSPFDGMPVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFVTR
Template Known Secondary structure 




GGG
SSS



TTTT


TTTT
S
TT


B


Template Predicted Secondary structure 





























Template SS confidence 
























































   395....400.........410.........420.........430.........440.........450.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions