Job Description P11290 Confidence 100.00% Date Wed Jan 25 15:20:38 GMT 2012 Rank 3 Aligned Residues 238 % Identity 15% Template d1xhba2 SCOP info Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain Resolution 2.50

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.		.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.				60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																	.																			.	.																								.	.	.
Query SS confidence																	.																			.	.																								.	.	.
Query Sequence		S	T	N	K	L	S	V	I	I	P	L	Y	N	A	G	.	D	D	F	R	T	C	M	E	S	L	I	T	Q	T	W	T	A	L	.	.	E	I	I	I	I	N	D	G	S	T	D	N	S	V	E	I	A	K	Y	Y	A	E	N	.	.	.	Y	P	H	V	R	L	L	H	Q	A	N	A	G	A	S	V	A	R
Query Conservation																	.																			.	.																								.	.	.
Alig confidence																	.																			.	.																								.	.	.
Template Conservation
Template Sequence		N	L	P	T	T	S	V	V	I	V	F	H	N	E	A	W	S	T	L	L	R	T	V	H	S	V	I	N	R	S	P	R	H	M	I	E	E	I	V	L	V	D	D	A	S	E	R	D	F	L	K	R	P	L	E	S	Y	V	K	K	L	K	V	P	V	H	V	I	R	M	E	Q	R	S	G	L	I	R	A	R
Template Known Secondary structure													S	S																S	S		G	G	G										S				G	G	G	T									S	S	S	S								S	S
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.												.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	R	G	I	E	V	A	T	G	K	Y	V	A	F	V	D	A	D	D	E	V	Y	P	T	M	Y	E	T	L	M	T	M	A	L	E	D	D	L	D	V	A	Q	C	N	A	D	W	C	F	R	E	T	G	E	T	W	Q	S	I	P	T	D	R	L	R	.	.	.	.	.	.	.	.	.	.	.	S	T	G	V
Query Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	G	A	A	V	S	R	G	Q	V	I	T	F	L	D	A	H	C	E	C	T	A	G	W	L	E	P	L	L	A	R	I	K	H	D	R	R	T	V	V	C	P	I	I	D	V	I	S	D	D	T	F	E	Y	M	A	G	S	D	M	T	Y	G	G	F	N	W	K	L	N	F	R	W	Y	P	V	P	Q	R
Template Known Secondary structure										S	S							S	S					T	T													T	T												S	S	S								T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		L	T	G	P	D	W	L	R	M	G	L	S	S	R	R	W	T	H	V	V	W	M	G	V	Y	R	R	D	V	I	V	K	N	N	I	K	F	I	A	G	L	H	H	.	.	Q	D	I	V	W	T	T	E	F	M	F	N	A	L	R	A	R	Y	T	E	Q	S	L	Y	K	Y	Y	L	H	N	T	S	V	S	R
Query Conservation																																													.	.
Alig confidence																																													.	.
Template Conservation
Template Sequence		E	M	D	R	R	K	G	D	R	T	L	P	V	R	T	P	T	M	A	G	G	L	F	S	I	D	R	D	Y	F	Q	E	I	G	T	Y	D	A	G	M	D	I	W	G	G	E	N	L	E	I	S	F	R	I	W	Q	C	G	G	T	L	E	I	V	T	C	S	H	V	G	H	V	F	G	Q	I	I	N	K	N
Template Known Secondary structure						T	T	T		T	T	S					S	B			S	S	S											T	T	S			T	T	S		T	T					S									T	T
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	R	Q	G	N	K	N	L	N	Y	Q	R	H	Y	I	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	R	R	L	A	E	V	W	M	D	E	F	K	N	F	F	Y
Template Known Secondary structure											G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions