Job Description P11290 Confidence 90.49% Date Wed Jan 25 15:20:38 GMT 2012 Rank 38 Aligned Residues 187 % Identity 13% Template c2y6pC_ PDB info PDB header:transferase Chain: C: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: evidence for a two-metal-ion-mechanism in the2 kdo-cytidylyltransferase kdsb Resolution 2.10 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	G	D	D	F	R	T	C	M	E	S	L	I	T	Q	T	W	T	A	L	E	I	I	I	I	N	D	G	S	T	D	N	S	V	E	I	A	K	Y	Y	A	E	N	Y	P	H	V	R	L	L	H	Q	A	N	A	G	A	S	V	A	R	N	R	G	I	E	V	A	T	G	K	Y	V	A	F	V	D	A	D
Query Conservation
Alig confidence																		.	.											.	.	.	.	.	.	.
Template Conservation																		.	.											.	.	.	.	.	.	.
Template Sequence		L	G	K	P	L	I	R	W	V	V	E	G	L	V	K	T	.	.	G	E	R	V	I	L	A	T	D	S	.	.	.	.	.	.	.	E	R	V	K	E	V	V	E	D	L	C	E	V	F	L	T	P	S	D	L	P	S	G	S	D	R	V	L	Y	V	V	R	D	L	D	V	D	L	I	I	N	Y	Q	G	D
Template Known Secondary structure		T	T													T	T	.	.	T	S							S		.	.	.	.	.	.	.								T	T	T	S							T	T		S	S										T	T				S							T	T
Template Predicted Secondary structure																		.	.											.	.	.	.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50								.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		96	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		D	E	V	.	Y	P	T	M	Y	E	T	L	M	T	M	A	L	E	D	D	L	D	V	A	Q	C	N	A	D	W	C	F	R	E	T	G	E	T	W	Q	S	I	P	T	D	R	L	R	S	T	G	V	L	T	G	P	D	W	L	R	M	G	L	S	S	R	R	W	T	H	V	V	W	M	G	V	Y	R	R	D
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		E	P	F	V	Y	E	E	D	I	K	L	I	F	R	E	L	E	K	G	E	R	V	V	T	L	A	R	K	D	K	E	A	Y	E	R	P	E	D	V	K	V	V	L	D	R	E	G	Y	A	L	Y	F	S	R	S	P	I	P	Y	F	R	K	N	D	T	F	Y	P	L	K	H	V	G	I	Y	G	F	R	K	E
Template Known Secondary structure																				T		S									S	T	T	T	T		T	T	S							T	T	S	B						S	S			S			S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	V	K	N	N	I	K	F	I	A	G	L	H	H	Q	D	I	V	W	T	T	E	F	M	F	N	A	L	R	A	R	Y	T	E	Q	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	M	E	F	G	A	M	P	P	S	K	L	E	Q	I	E	G	L	E	Q	L	R	L	L	E	N	G	I	K	I	K	V	L	I	T	E
Template Known Secondary structure								T	S										T		T							T	T
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions