Job Description P11290 Confidence 32.52% Date Wed Jan 25 15:20:38 GMT 2012 Rank 84 Aligned Residues 100 % Identity 16% Template c2xzlA_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent helicase nam7; PDBTitle: upf1-rna complex Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.										.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.	.
Query Sequence		K	L	S	V	I	I	P	L	Y	N	A	G	D	D	F	R	T	C	M	E	S	L	I	T	Q	T	W	T	A	L	E	I	I	I	I	N	D	G	S	T	D	N	S	V	E	I	A	K	Y	Y	A	E	N	Y	P	H	V	R	L	L	H	Q	A	N	A	G	A	S	V	A	.	.	.	.	.	.	.	.	.	R
Query Conservation																																																																								.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.
Template Sequence		Q	I	G	V	I	T	P	Y	E	G	Q	R	A	Y	I	L	Q	Y	M	Q	M	N	G	S	L	D	K	D	L	Y	I	K	V	E	V	A	S	.	.	.	.	.	.	.	.	.	V	D	A	F	Q	G	R	E	K	D	Y	I	I	L	S	C	V	R	A	N	E	Q	Q	A	I	G	F	L	R	D	P	R	R	L
Template Known Secondary structure		G						S																	S	S							T	S					.	.	.	.	.	.	.	.	.					T	T															T	T				G	G	G	G
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.
Template SS confidence
		725	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.										.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	R	G	I	E	V	A	T	G	K	Y	V	A	F	V	D	A	D	D	E	V	Y	P	T	M	Y	E	T	L	M	T	M	A	L	E	D	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	V	G	L	T	R	A	K	Y	G	L	V	I	L	G	N	P	R	S	L	A	R	N	T	L	W	N	H	L	L	I	H	F	R	E	K	G	C
Template Known Secondary structure						S	S															T	T	S														T
Template Predicted Secondary structure
Template SS confidence
		796	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions