Job Description P11290 Confidence 22.20% Date Wed Jan 25 15:20:38 GMT 2012 Rank 98 Aligned Residues 102 % Identity 13% Template c2wjyA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form Resolution 2.50 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.					.	.	70	.	.	.	.						.	.	.
Predicted Secondary structure																																																															.	.	.	.								.	.	.	.	.
Query SS confidence																																																															.	.	.	.								.	.	.	.	.
Query Sequence		K	L	S	V	I	I	P	L	Y	N	A	G	D	D	F	R	T	C	M	E	S	L	I	T	Q	T	W	T	A	L	E	I	I	I	I	N	D	G	S	T	D	N	S	V	E	I	A	K	Y	Y	A	E	N	Y	P	H	V	R	L	L	H	.	.	.	.	Q	A	N	A	G	A	S	.	.	.	.	.	V	A	R
Query Conservation																																																															.	.	.	.								.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.																.	.	.	.								.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.
Template Sequence		Q	I	G	I	I	T	P	Y	E	G	Q	R	S	Y	L	V	Q	Y	M	Q	F	S	G	S	L	H	T	K	L	Y	Q	E	V	E	I	A	S	.	.	.	.	.	.	.	.	.	V	D	A	F	Q	G	R	E	K	D	F	I	I	L	S	C	V	R	A	N	E	H	Q	G	I	G	F	L	N	D	P	R	R	L
Template Known Secondary structure		G						S																	S	S							T	S					.	.	.	.	.	.	.	.	.	G	G	G	G	T	T														S						G	G	G	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.
Template SS confidence
		789	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.										.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	R	G	I	E	V	A	T	G	K	Y	V	A	F	V	D	A	D	D	E	V	Y	P	T	M	Y	E	T	L	M	T	M	A	L	E	D	D	L	D	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	V	A	L	T	R	A	R	Y	G	V	I	I	V	G	N	P	K	A	L	S	K	Q	P	L	W	N	H	L	L	N	Y	Y	K	E	Q	K	V	L	V
Template Known Secondary structure						T	S															T	S	S													T	T
Template Predicted Secondary structure
Template SS confidence
		860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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