Job Description P11290 Confidence 27.50% Date Wed Jan 25 15:20:38 GMT 2012 Rank 92 Aligned Residues 105 % Identity 12% Template c2gk7A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: structural and functional insights into the human upf1 helicase core Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		S	T	N	K	L	S	V	I	I	P	L	Y	N	A	G	D	D	F	R	T	C	M	E	S	L	I	T	Q	T	W	T	A	L	E	I	I	I	I	N	D	G	S	T	D	N	S	V	E	I	A	K	Y	Y	A	E	N	Y	P	H	V	R	L	L	H	Q	A	N	A	G	A	S	V	A	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.
Template Sequence		K	P	D	Q	I	G	I	I	T	P	Y	E	G	Q	R	S	Y	L	V	Q	Y	M	Q	F	S	G	S	L	H	T	K	L	Y	Q	E	V	E	I	A	S	.	.	.	.	.	.	.	.	.	V	D	A	F	Q	G	R	E	K	D	F	I	I	L	S	C	V	R	A	N	E	H	Q	G	I	G	F	L	N	D	P
Template Known Secondary structure			G	G	G						S															S		S	S						T	T	S					.	.	.	.	.	.	.	.	.	S	G	G	G	T	T														S		S				S	T	T	S
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.
Template SS confidence
		786	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.										.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.
				77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	R	N	R	G	I	E	V	A	T	G	K	Y	V	A	F	V	D	A	D	D	E	V	Y	P	T	M	Y	E	T	L	M	T	M	A	L	E	D	D	L	D	V
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		R	R	L	N	V	A	L	T	R	A	R	Y	G	V	I	I	V	G	N	P	K	A	L	S	K	Q	P	L	W	N	H	L	L	N	Y	Y	K	E	Q	K	V	L	V
Template Known Secondary structure									T	S																S	S													T	T			B
Template Predicted Secondary structure
Template SS confidence
		857	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions