Job Description P75836 Confidence 99.76% Date Thu Jan 5 12:14:51 GMT 2012 Rank 19 Aligned Residues 197 % Identity 16% Template c3kosA_ PDB info PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional activator ampr; PDBTitle: structure of the ampr effector binding domain from citrobacter2 freundii Resolution 1.83 Å

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		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	T	L	K	I	N	A	A	R	V	A	A	R	I	F	L	M	S	L	L	V	G	F	T	R	E	Y	P	D	I	K	V	E	L	T	T	D	D	S	L	V	D	I	V	Q	Q	G	F	D	A	G	V	R	L	S	C	I	V	E	K	D	M	I	S	V	A	I	G	P	P	V	K	L	C	V	A	A	T	P
Query Conservation
Alig confidence																																																																															.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		Q	E	K	L	K	I	G	V	V	G	T	F	A	I	G	C	L	F	P	L	L	S	D	F	K	R	S	Y	P	H	I	D	L	H	I	S	T	H	N	N	R	V	D	P	A	A	E	G	L	D	Y	T	I	R	Y	G	G	G	A	W	H	D	T	D	A	Q	Y	L	C	S	A	L	X	S	P	L	C	.	.	.
Template Known Secondary structure																	T													T	T										S								T		S								S			T	T															B	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	F	A	R	Y	G	K	P	R	H	P	H	D	L	L	N	H	Q	C	V	V	F	R	Y	P	S	G	K	P	F	H	W	Q	F	A	K	E	L	E	I	A	V	A	G	N	I	I	L	D	D	V	D	A	E	L	E	A	V	L	M	G	A	G	I	G	Y	L	L	Y	E	Q	I	K	E	Y	L	D	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	P	T	L	A	S	Q	I	Q	T	P	A	D	I	L	K	F	P	L	L	R	S	Y	R	R	D	E	W	A	L	W	X	Q	T	V	G	E	A	P	P	S	P	T	H	N	V	X	V	F	D	S	S	V	T	X	L	E	A	A	Q	A	G	X	G	V	A	I	A	P	V	R	X	F	T	H	L	L	S	S	E
Template Known Secondary structure							T	T		S	S	G	G	G	G	G	G	S						S		T	T									T	T						T	T	S						S											T	T	S		B					G	G	G							T	T
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	E	C	V	L	E	D	W	S	T	E	R	P	G	F	Q	I	Y	Y	P	N	R	Q	Y	M	S	C	G	L	R	A	F	L	D	Y	V	K	T	G	Q
Query Conservation
Alig confidence														.
Template Conservation														.
Template Sequence		R	I	V	Q	P	F	L	T	Q	I	D	L	.	G	S	Y	W	I	T	R	L	Q	S	R	P	E	T	P	A	X	R	E	F	S	R	W	L	T	G	V	L
Template Known Secondary structure		S	S	B							B		S	.									T	T	S
Template Predicted Secondary structure														.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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