 |
Job Description | P75836 | Confidence | 37.35% | Date | Thu Jan 5 12:14:51 GMT 2012 |
Rank | 336 | Aligned Residues | 83 |
% Identity | 6% | Template | c3fj7A_ |
PDB info |
PDB header:protein binding | Chain: A: PDB Molecule:major antigenic peptide peb3; |
PDBTitle: crystal structure of l-phospholactate bound peb3
|
Resolution | 1.70 Å |
|
 |
  |   |
215 | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | G | N | I | I | L | D | D | V | D | A | E | L | E | A | V | L | M | G | A | G | I | G | Y | L | L | Y | E | Q | I | K | E | Y | L | D | T | G | R | L | E | C | V | L | E | D | W | S | T | E | R | P | G | F | Q | I | Y | Y | P | N | R | Q | Y | M | S | C | G | L | R | A | F | L | D | Y | V | K | T | G | Q | I | C |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   | . | . |   |   |   |   |   |   |   |   |
|   |   |
|
|   |
|
|   |
|   |
|   |
|
Template Sequence |   |
N | I | V | A | F | V | P | N | S | G | S | A | R | K | L | F | A | Q | D | Q | A | D | A | W | I | T | W | I | D | W | S | K | S | N | P | D | I | G | T | A | V | A | I | E | K | D | L | V | V | Y | R | T | F | N | V | I | . |
. |
A | K | E | G | A | S | K | E | T | Q | D | F | I | A | Y | L | S | S | K | E | A | K |
Template Known Secondary structure |   |
T |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |  |  |  |  |  |  |  |  |  |
| T | T | S |
|  |  |  |  |
|
| T | T | T |
|
|  |  |  |  |  |  |  | . | . |  |
| T | T |
|
|  |  |  |  |  |  |  |  |  | T | T | S |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
163 | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | |
|
. | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 |
  |
  |   |
295 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
Query Sequence |   |
Q | S | Q | R | H |
Query Conservation |   |
  |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |
Template Sequence |   |
E | I | F | K | K |
Template Known Secondary structure |   |
 |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
  |   |
241 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|